These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

408 related articles for article (PubMed ID: 30921318)

  • 1. NOJAH: NOt Just Another Heatmap for genome-wide cluster analysis.
    Rupji M; Dwivedi B; Kowalski J
    PLoS One; 2019; 14(3):e0204542. PubMed ID: 30921318
    [TBL] [Abstract][Full Text] [Related]  

  • 2. MethGET: web-based bioinformatics software for correlating genome-wide DNA methylation and gene expression.
    Teng CS; Wu BH; Yen MR; Chen PY
    BMC Genomics; 2020 May; 21(1):375. PubMed ID: 32471342
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Automatically visualise and analyse data on pathways using PathVisioRPC from any programming environment.
    Bohler A; Eijssen LM; van Iersel MP; Leemans C; Willighagen EL; Kutmon M; Jaillard M; Evelo CT
    BMC Bioinformatics; 2015 Aug; 16(1):267. PubMed ID: 26298294
    [TBL] [Abstract][Full Text] [Related]  

  • 4. PGen: large-scale genomic variations analysis workflow and browser in SoyKB.
    Liu Y; Khan SM; Wang J; Rynge M; Zhang Y; Zeng S; Chen S; Maldonado Dos Santos JV; Valliyodan B; Calyam PP; Merchant N; Nguyen HT; Xu D; Joshi T
    BMC Bioinformatics; 2016 Oct; 17(Suppl 13):337. PubMed ID: 27766951
    [TBL] [Abstract][Full Text] [Related]  

  • 5. systemPipeR: NGS workflow and report generation environment.
    H Backman TW; Girke T
    BMC Bioinformatics; 2016 Sep; 17():388. PubMed ID: 27650223
    [TBL] [Abstract][Full Text] [Related]  

  • 6. shinyheatmap: Ultra fast low memory heatmap web interface for big data genomics.
    Khomtchouk BB; Hennessy JR; Wahlestedt C
    PLoS One; 2017; 12(5):e0176334. PubMed ID: 28493881
    [TBL] [Abstract][Full Text] [Related]  

  • 7. DraGnET: software for storing, managing and analyzing annotated draft genome sequence data.
    Duncan S; Sirkanungo R; Miller L; Phillips GJ
    BMC Bioinformatics; 2010 Feb; 11():100. PubMed ID: 20175920
    [TBL] [Abstract][Full Text] [Related]  

  • 8. NEAT: a framework for building fully automated NGS pipelines and analyses.
    Schorderet P
    BMC Bioinformatics; 2016 Feb; 17():53. PubMed ID: 26830846
    [TBL] [Abstract][Full Text] [Related]  

  • 9. jHeatmap: an interactive heatmap viewer for the web.
    Deu-Pons J; Schroeder MP; Lopez-Bigas N
    Bioinformatics; 2014 Jun; 30(12):1757-8. PubMed ID: 24567544
    [TBL] [Abstract][Full Text] [Related]  

  • 10. SeqAssist: a novel toolkit for preliminary analysis of next-generation sequencing data.
    Peng Y; Maxwell AS; Barker ND; Laird JG; Kennedy AJ; Wang N; Zhang C; Gong P
    BMC Bioinformatics; 2014; 15 Suppl 11(Suppl 11):S10. PubMed ID: 25349885
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Identification of indels in next-generation sequencing data.
    Ratan A; Olson TL; Loughran TP; Miller W
    BMC Bioinformatics; 2015 Feb; 16(1):42. PubMed ID: 25879703
    [TBL] [Abstract][Full Text] [Related]  

  • 12. iCopyDAV: Integrated platform for copy number variations-Detection, annotation and visualization.
    Dharanipragada P; Vogeti S; Parekh N
    PLoS One; 2018; 13(4):e0195334. PubMed ID: 29621297
    [TBL] [Abstract][Full Text] [Related]  

  • 13. NGSphy: phylogenomic simulation of next-generation sequencing data.
    Escalona M; Rocha S; Posada D
    Bioinformatics; 2018 Jul; 34(14):2506-2507. PubMed ID: 29534152
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets.
    Samadian S; Bruce JP; Pugh TJ
    PLoS Comput Biol; 2018 Mar; 14(3):e1006080. PubMed ID: 29590101
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Practical impacts of genomic data "cleaning" on biological discovery using surrogate variable analysis.
    Jaffe AE; Hyde T; Kleinman J; Weinbergern DR; Chenoweth JG; McKay RD; Leek JT; Colantuoni C
    BMC Bioinformatics; 2015 Nov; 16():372. PubMed ID: 26545828
    [TBL] [Abstract][Full Text] [Related]  

  • 16. VING: a software for visualization of deep sequencing signals.
    Descrimes M; Ben Zouari Y; Wery M; Legendre R; Gautheret D; Morillon A
    BMC Res Notes; 2015 Sep; 8():419. PubMed ID: 26346985
    [TBL] [Abstract][Full Text] [Related]  

  • 17. CANEapp: a user-friendly application for automated next generation transcriptomic data analysis.
    Velmeshev D; Lally P; Magistri M; Faghihi MA
    BMC Genomics; 2016 Jan; 17():49. PubMed ID: 26758513
    [TBL] [Abstract][Full Text] [Related]  

  • 18. shinyGISPA: A web application for characterizing phenotype by gene sets using multiple omics data combinations.
    Dwivedi B; Kowalski J
    PLoS One; 2018; 13(2):e0192563. PubMed ID: 29415010
    [TBL] [Abstract][Full Text] [Related]  

  • 19. COSAP: Comparative Sequencing Analysis Platform.
    Ergun MA; Cinal O; Bakışlı B; Emül AA; Baysan M
    BMC Bioinformatics; 2024 Mar; 25(1):130. PubMed ID: 38532317
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Non-synonymous variations in cancer and their effects on the human proteome: workflow for NGS data biocuration and proteome-wide analysis of TCGA data.
    Cole C; Krampis K; Karagiannis K; Almeida JS; Faison WJ; Motwani M; Wan Q; Golikov A; Pan Y; Simonyan V; Mazumder R
    BMC Bioinformatics; 2014 Jan; 15():28. PubMed ID: 24467687
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 21.