These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

122 related articles for article (PubMed ID: 30942864)

  • 41. Structure alignment of membrane proteins: Accuracy of available tools and a consensus strategy.
    Stamm M; Forrest LR
    Proteins; 2015 Sep; 83(9):1720-32. PubMed ID: 26178143
    [TBL] [Abstract][Full Text] [Related]  

  • 42. eProbalign: generation and manipulation of multiple sequence alignments using partition function posterior probabilities.
    Chikkagoudar S; Roshan U; Livesay D
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W675-7. PubMed ID: 17485479
    [TBL] [Abstract][Full Text] [Related]  

  • 43. BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs.
    Thompson JD; Plewniak F; Poch O
    Bioinformatics; 1999 Jan; 15(1):87-8. PubMed ID: 10068696
    [TBL] [Abstract][Full Text] [Related]  

  • 44. PROMALS: towards accurate multiple sequence alignments of distantly related proteins.
    Pei J; Grishin NV
    Bioinformatics; 2007 Apr; 23(7):802-8. PubMed ID: 17267437
    [TBL] [Abstract][Full Text] [Related]  

  • 45. Quality measures for protein alignment benchmarks.
    Edgar RC
    Nucleic Acids Res; 2010 Apr; 38(7):2145-53. PubMed ID: 20047958
    [TBL] [Abstract][Full Text] [Related]  

  • 46. 3DCoffee@igs: a web server for combining sequences and structures into a multiple sequence alignment.
    Poirot O; Suhre K; Abergel C; O'Toole E; Notredame C
    Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W37-40. PubMed ID: 15215345
    [TBL] [Abstract][Full Text] [Related]  

  • 47. The iRMSD: a local measure of sequence alignment accuracy using structural information.
    Armougom F; Moretti S; Keduas V; Notredame C
    Bioinformatics; 2006 Jul; 22(14):e35-9. PubMed ID: 16873492
    [TBL] [Abstract][Full Text] [Related]  

  • 48. PASS2: an automated database of protein alignments organised as structural superfamilies.
    Bhaduri A; Pugalenthi G; Sowdhamini R
    BMC Bioinformatics; 2004 Apr; 5():35. PubMed ID: 15059245
    [TBL] [Abstract][Full Text] [Related]  

  • 49. QuanTest2: benchmarking multiple sequence alignments using secondary structure prediction.
    Sievers F; Higgins DG
    Bioinformatics; 2020 Jan; 36(1):90-95. PubMed ID: 31292629
    [TBL] [Abstract][Full Text] [Related]  

  • 50. DeepMSA: constructing deep multiple sequence alignment to improve contact prediction and fold-recognition for distant-homology proteins.
    Zhang C; Zheng W; Mortuza SM; Li Y; Zhang Y
    Bioinformatics; 2020 Apr; 36(7):2105-2112. PubMed ID: 31738385
    [TBL] [Abstract][Full Text] [Related]  

  • 51. Multiple sequence alignment based on profile alignment of intermediate sequences.
    Lu Y; Sze SH
    J Comput Biol; 2008 Sep; 15(7):767-77. PubMed ID: 18662101
    [TBL] [Abstract][Full Text] [Related]  

  • 52. Efficient merging of genome profile alignments.
    Hennig A; Nieselt K
    Bioinformatics; 2019 Jul; 35(14):i71-i80. PubMed ID: 31510683
    [TBL] [Abstract][Full Text] [Related]  

  • 53. MP-T: improving membrane protein alignment for structure prediction.
    Hill JR; Deane CM
    Bioinformatics; 2013 Jan; 29(1):54-61. PubMed ID: 23110969
    [TBL] [Abstract][Full Text] [Related]  

  • 54. PSI/TM-Coffee: a web server for fast and accurate multiple sequence alignments of regular and transmembrane proteins using homology extension on reduced databases.
    Floden EW; Tommaso PD; Chatzou M; Magis C; Notredame C; Chang JM
    Nucleic Acids Res; 2016 Jul; 44(W1):W339-43. PubMed ID: 27106060
    [TBL] [Abstract][Full Text] [Related]  

  • 55. Tcoffee@igs: A web server for computing, evaluating and combining multiple sequence alignments.
    Poirot O; O'Toole E; Notredame C
    Nucleic Acids Res; 2003 Jul; 31(13):3503-6. PubMed ID: 12824354
    [TBL] [Abstract][Full Text] [Related]  

  • 56. MSAT: a multiple sequence alignment tool based on TOPS.
    Ren T; Veeramalai M; Tan AC; Gilbert D
    Appl Bioinformatics; 2004; 3(2-3):149-58. PubMed ID: 15693740
    [TBL] [Abstract][Full Text] [Related]  

  • 57. Guide tree optimization with genetic algorithm to improve multiple protein 3D-structure alignment.
    Shegay MV; Švedas VK; Voevodin VV; Suplatov DA; Popova NN
    Bioinformatics; 2022 Jan; 38(4):985-989. PubMed ID: 34849594
    [TBL] [Abstract][Full Text] [Related]  

  • 58. AlignBucket: a tool to speed up 'all-against-all' protein sequence alignments optimizing length constraints.
    Profiti G; Fariselli P; Casadio R
    Bioinformatics; 2015 Dec; 31(23):3841-3. PubMed ID: 26231432
    [TBL] [Abstract][Full Text] [Related]  

  • 59. HHalign-Kbest: exploring sub-optimal alignments for remote homology comparative modeling.
    Yu J; Picord G; Tuffery P; Guerois R
    Bioinformatics; 2015 Dec; 31(23):3850-2. PubMed ID: 26231431
    [TBL] [Abstract][Full Text] [Related]  

  • 60. MATRAS: A program for protein 3D structure comparison.
    Kawabata T
    Nucleic Acids Res; 2003 Jul; 31(13):3367-9. PubMed ID: 12824329
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 7.