These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

131 related articles for article (PubMed ID: 30945247)

  • 41. Extending rule-based methods to model molecular geometry and 3D model resolution.
    Hoard B; Jacobson B; Manavi K; Tapia L
    BMC Syst Biol; 2016 Aug; 10 Suppl 2(Suppl 2):48. PubMed ID: 27490268
    [TBL] [Abstract][Full Text] [Related]  

  • 42. Multi-state modeling of biomolecules.
    Stefan MI; Bartol TM; Sejnowski TJ; Kennedy MB
    PLoS Comput Biol; 2014 Sep; 10(9):e1003844. PubMed ID: 25254957
    [TBL] [Abstract][Full Text] [Related]  

  • 43. An Overview of Network-Based and -Free Approaches for Stochastic Simulation of Biochemical Systems.
    Gupta A; Mendes P
    Computation (Basel); 2018 Mar; 6(1):. PubMed ID: 29938118
    [TBL] [Abstract][Full Text] [Related]  

  • 44. Meredys, a multi-compartment reaction-diffusion simulator using multistate realistic molecular complexes.
    Tolle DP; Le Novère N
    BMC Syst Biol; 2010 Mar; 4():24. PubMed ID: 20233406
    [TBL] [Abstract][Full Text] [Related]  

  • 45. Slow update stochastic simulation algorithms for modeling complex biochemical networks.
    Ghosh D; De RK
    Biosystems; 2017 Dec; 162():135-146. PubMed ID: 29080799
    [TBL] [Abstract][Full Text] [Related]  

  • 46. pSpatiocyte: a high-performance simulator for intracellular reaction-diffusion systems.
    Arjunan SNV; Miyauchi A; Iwamoto K; Takahashi K
    BMC Bioinformatics; 2020 Jan; 21(1):33. PubMed ID: 31996129
    [TBL] [Abstract][Full Text] [Related]  

  • 47. Markov Chain Aggregation and Its Application to Rule-Based Modelling.
    Petrov T
    Methods Mol Biol; 2019; 1945():297-313. PubMed ID: 30945253
    [TBL] [Abstract][Full Text] [Related]  

  • 48. Detailed simulations of cell biology with Smoldyn 2.1.
    Andrews SS; Addy NJ; Brent R; Arkin AP
    PLoS Comput Biol; 2010 Mar; 6(3):e1000705. PubMed ID: 20300644
    [TBL] [Abstract][Full Text] [Related]  

  • 49. Hybrid deterministic/stochastic simulation of complex biochemical systems.
    Lecca P; Bagagiolo F; Scarpa M
    Mol Biosyst; 2017 Nov; 13(12):2672-2686. PubMed ID: 29058744
    [TBL] [Abstract][Full Text] [Related]  

  • 50. Using Python for Spatially Resolved Modeling with Simmune.
    Angermann BR; Meier-Schellersheim M
    Methods Mol Biol; 2019; 1945():161-177. PubMed ID: 30945246
    [TBL] [Abstract][Full Text] [Related]  

  • 51. FiCoS: A fine-grained and coarse-grained GPU-powered deterministic simulator for biochemical networks.
    Tangherloni A; Nobile MS; Cazzaniga P; Capitoli G; Spolaor S; Rundo L; Mauri G; Besozzi D
    PLoS Comput Biol; 2021 Sep; 17(9):e1009410. PubMed ID: 34499658
    [TBL] [Abstract][Full Text] [Related]  

  • 52. Discrete-time stochastic modeling and simulation of biochemical networks.
    Sandmann W
    Comput Biol Chem; 2008 Aug; 32(4):292-7. PubMed ID: 18499525
    [TBL] [Abstract][Full Text] [Related]  

  • 53. Cellware--a multi-algorithmic software for computational systems biology.
    Dhar P; Meng TC; Somani S; Ye L; Sairam A; Chitre M; Hao Z; Sakharkar K
    Bioinformatics; 2004 May; 20(8):1319-21. PubMed ID: 14871872
    [TBL] [Abstract][Full Text] [Related]  

  • 54. Accurate particle-based simulation of adsorption, desorption and partial transmission.
    Andrews SS
    Phys Biol; 2009 Nov; 6(4):046015. PubMed ID: 19910670
    [TBL] [Abstract][Full Text] [Related]  

  • 55. The Process-Interaction-Model: a common representation of rule-based and logical models allows studying signal transduction on different levels of detail.
    Kolczyk K; Samaga R; Conzelmann H; Mirschel S; Conradi C
    BMC Bioinformatics; 2012 Sep; 13():251. PubMed ID: 23020215
    [TBL] [Abstract][Full Text] [Related]  

  • 56. Recipes for Analysis of Molecular Networks Using the Data2Dynamics Modeling Environment.
    Steiert B; Kreutz C; Raue A; Timmer J
    Methods Mol Biol; 2019; 1945():341-362. PubMed ID: 30945255
    [TBL] [Abstract][Full Text] [Related]  

  • 57. Rules for modeling signal-transduction systems.
    Hlavacek WS; Faeder JR; Blinov ML; Posner RG; Hucka M; Fontana W
    Sci STKE; 2006 Jul; 2006(344):re6. PubMed ID: 16849649
    [TBL] [Abstract][Full Text] [Related]  

  • 58. Modeling languages for biochemical network simulation: reaction vs equation based approaches.
    Wiechert W; Noack S; Elsheikh A
    Adv Biochem Eng Biotechnol; 2010; 121():109-38. PubMed ID: 20309675
    [TBL] [Abstract][Full Text] [Related]  

  • 59. eSTGt: a programming and simulation environment for population dynamics.
    Spiro A; Shapiro E
    BMC Bioinformatics; 2016 Apr; 17(1):187. PubMed ID: 27117841
    [TBL] [Abstract][Full Text] [Related]  

  • 60. Dynamic Influence Networks for Rule-Based Models.
    Forbes AG; Burks A; Lee K; Li X; Boutillier P; Krivine J; Fontana W
    IEEE Trans Vis Comput Graph; 2018 Jan; 24(1):184-194. PubMed ID: 28866584
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 7.