167 related articles for article (PubMed ID: 30953075)
1. High resolution discovery of chromatin interactions.
Guo Y; Krismer K; Closser M; Wichterle H; Gifford DK
Nucleic Acids Res; 2019 Apr; 47(6):e35. PubMed ID: 30953075
[TBL] [Abstract][Full Text] [Related]
2. Deciphering Noncoding RNA and Chromatin Interactions: Multiplex Chromatin Interaction Analysis by Paired-End Tag Sequencing (mChIA-PET).
Choy J; Fullwood MJ
Methods Mol Biol; 2017; 1468():63-89. PubMed ID: 27662871
[TBL] [Abstract][Full Text] [Related]
3. Long-read ChIA-PET for base-pair-resolution mapping of haplotype-specific chromatin interactions.
Li X; Luo OJ; Wang P; Zheng M; Wang D; Piecuch E; Zhu JJ; Tian SZ; Tang Z; Li G; Ruan Y
Nat Protoc; 2017 May; 12(5):899-915. PubMed ID: 28358394
[TBL] [Abstract][Full Text] [Related]
4. ChIA-PET tool for comprehensive chromatin interaction analysis with paired-end tag sequencing.
Li G; Fullwood MJ; Xu H; Mulawadi FH; Velkov S; Vega V; Ariyaratne PN; Mohamed YB; Ooi HS; Tennakoon C; Wei CL; Ruan Y; Sung WK
Genome Biol; 2010; 11(2):R22. PubMed ID: 20181287
[TBL] [Abstract][Full Text] [Related]
5. Chromatin Immunoprecipitation for Chromatin Interaction Analysis Using Paired-End-Tag (ChIA-PET) Sequencing in Tadpole Tissues.
Buisine N; Ruan X; Ruan Y; Sachs LM
Cold Spring Harb Protoc; 2018 Aug; 2018(8):. PubMed ID: 29895563
[TBL] [Abstract][Full Text] [Related]
6. Identification of significant chromatin contacts from HiChIP data by FitHiChIP.
Bhattacharyya S; Chandra V; Vijayanand P; Ay F
Nat Commun; 2019 Sep; 10(1):4221. PubMed ID: 31530818
[TBL] [Abstract][Full Text] [Related]
7. MAPS: Model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments.
Juric I; Yu M; Abnousi A; Raviram R; Fang R; Zhao Y; Zhang Y; Qiu Y; Yang Y; Li Y; Ren B; Hu M
PLoS Comput Biol; 2019 Apr; 15(4):e1006982. PubMed ID: 30986246
[TBL] [Abstract][Full Text] [Related]
8. Chromatin interaction analysis using paired-end tag sequencing.
Fullwood MJ; Han Y; Wei CL; Ruan X; Ruan Y
Curr Protoc Mol Biol; 2010 Jan; Chapter 21():Unit 21.15.1-25. PubMed ID: 20069536
[TBL] [Abstract][Full Text] [Related]
9. Mango: a bias-correcting ChIA-PET analysis pipeline.
Phanstiel DH; Boyle AP; Heidari N; Snyder MP
Bioinformatics; 2015 Oct; 31(19):3092-8. PubMed ID: 26034063
[TBL] [Abstract][Full Text] [Related]
10. MICC: an R package for identifying chromatin interactions from ChIA-PET data.
He C; Zhang MQ; Wang X
Bioinformatics; 2015 Dec; 31(23):3832-4. PubMed ID: 26231426
[TBL] [Abstract][Full Text] [Related]
11. Chromatin Interaction Analysis with Paired-End Tag Sequencing (ChIA-PET) for mapping chromatin interactions and understanding transcription regulation.
Goh Y; Fullwood MJ; Poh HM; Peh SQ; Ong CT; Zhang J; Ruan X; Ruan Y
J Vis Exp; 2012 Apr; (62):. PubMed ID: 22564980
[TBL] [Abstract][Full Text] [Related]
12. Measurement of differential chromatin interactions with absolute quantification of architecture (AQuA-HiChIP).
Gryder BE; Khan J; Stanton BZ
Nat Protoc; 2020 Mar; 15(3):1209-1236. PubMed ID: 32051612
[TBL] [Abstract][Full Text] [Related]
13. Design and analysis of ChIP-seq experiments for DNA-binding proteins.
Kharchenko PV; Tolstorukov MY; Park PJ
Nat Biotechnol; 2008 Dec; 26(12):1351-9. PubMed ID: 19029915
[TBL] [Abstract][Full Text] [Related]
14. Chromatin Interaction Analysis with Paired-End Tag (ChIA-PET) sequencing technology and application.
Li G; Cai L; Chang H; Hong P; Zhou Q; Kulakova EV; Kolchanov NA; Ruan Y
BMC Genomics; 2014; 15 Suppl 12(Suppl 12):S11. PubMed ID: 25563301
[TBL] [Abstract][Full Text] [Related]
15. Chromatin Interaction Analysis Using Paired-End-Tag (ChIA-PET) Sequencing in Tadpole Tissues.
Buisine N; Ruan X; Ruan Y; Sachs LM
Cold Spring Harb Protoc; 2018 Aug; 2018(8):. PubMed ID: 29895565
[TBL] [Abstract][Full Text] [Related]
16. Methods for comparative ChIA-PET and Hi-C data analysis.
Capurso D; Tang Z; Ruan Y
Methods; 2020 Jan; 170():69-74. PubMed ID: 31629084
[TBL] [Abstract][Full Text] [Related]
17. MMCT-Loop: a mix model-based pipeline for calling targeted 3D chromatin loops.
Tang L; Liao J; Hill MC; Hu J; Zhao Y; Ellinor PT; Li M
Nucleic Acids Res; 2024 Mar; 52(5):e25. PubMed ID: 38281134
[TBL] [Abstract][Full Text] [Related]
18. A pipeline for the identification and characterization of chromatin modifications derived from ChIP-Seq datasets.
Kaspi A; Ziemann M; Rafehi H; Lazarus R; El-Osta A
Biochimie; 2012 Nov; 94(11):2353-9. PubMed ID: 22705386
[TBL] [Abstract][Full Text] [Related]
19. Peak-Finding Algorithms.
Hung JH; Weng Z
Cold Spring Harb Protoc; 2017 Mar; 2017(3):. PubMed ID: 27574196
[TBL] [Abstract][Full Text] [Related]
20. MACPET: model-based analysis for ChIA-PET.
Vardaxis I; Drabløs F; Rye MB; Lindqvist BH
Biostatistics; 2020 Jul; 21(3):625-639. PubMed ID: 30698663
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
