These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

177 related articles for article (PubMed ID: 30958823)

  • 1. The intrinsic dimension of protein sequence evolution.
    Facco E; Pagnani A; Russo ET; Laio A
    PLoS Comput Biol; 2019 Apr; 15(4):e1006767. PubMed ID: 30958823
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Size and structure of the sequence space of repeat proteins.
    Marchi J; Galpern EA; Espada R; Ferreiro DU; Walczak AM; Mora T
    PLoS Comput Biol; 2019 Aug; 15(8):e1007282. PubMed ID: 31415557
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Evolution of protein sequences and structures.
    Wood TC; Pearson WR
    J Mol Biol; 1999 Aug; 291(4):977-95. PubMed ID: 10452901
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Joint evolutionary trees: a large-scale method to predict protein interfaces based on sequence sampling.
    Engelen S; Trojan LA; Sacquin-Mora S; Lavery R; Carbone A
    PLoS Comput Biol; 2009 Jan; 5(1):e1000267. PubMed ID: 19165315
    [TBL] [Abstract][Full Text] [Related]  

  • 5. MultiSeq: unifying sequence and structure data for evolutionary analysis.
    Roberts E; Eargle J; Wright D; Luthey-Schulten Z
    BMC Bioinformatics; 2006 Aug; 7():382. PubMed ID: 16914055
    [TBL] [Abstract][Full Text] [Related]  

  • 6. A protein evolution model with independent sites that reproduces site-specific amino acid distributions from the Protein Data Bank.
    Bastolla U; Porto M; Roman HE; Vendruscolo M
    BMC Evol Biol; 2006 May; 6():43. PubMed ID: 16737532
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Are residues in a protein folding nucleus evolutionarily conserved?
    Tseng YY; Liang J
    J Mol Biol; 2004 Jan; 335(4):869-80. PubMed ID: 14698285
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Protein structure determination using metagenome sequence data.
    Ovchinnikov S; Park H; Varghese N; Huang PS; Pavlopoulos GA; Kim DE; Kamisetty H; Kyrpides NC; Baker D
    Science; 2017 Jan; 355(6322):294-298. PubMed ID: 28104891
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Thoroughly sampling sequence space: large-scale protein design of structural ensembles.
    Larson SM; England JL; Desjarlais JR; Pande VS
    Protein Sci; 2002 Dec; 11(12):2804-13. PubMed ID: 12441379
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Emergence of protein fold families through rational design.
    Ding F; Dokholyan NV
    PLoS Comput Biol; 2006 Jul; 2(7):e85. PubMed ID: 16839198
    [TBL] [Abstract][Full Text] [Related]  

  • 11. SGC--structural biology and human health: a new approach to publishing structural biology results.
    Lee WH; Atienza-Herrero J; Abagyan R; Marsden BD
    PLoS One; 2009 Oct; 4(10):e7675. PubMed ID: 19847312
    [No Abstract]   [Full Text] [Related]  

  • 12. Computing motif correlations in proteins.
    Horng JT; Huang HD; Wang SH; Chen MY; Huang SL; Hwang JK
    J Comput Chem; 2003 Dec; 24(16):2032-43. PubMed ID: 14531057
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Improving protein secondary structure prediction based on short subsequences with local structure similarity.
    Lin HN; Sung TY; Ho SY; Hsu WL
    BMC Genomics; 2010 Dec; 11 Suppl 4(Suppl 4):S4. PubMed ID: 21143813
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Efficient generative modeling of protein sequences using simple autoregressive models.
    Trinquier J; Uguzzoni G; Pagnani A; Zamponi F; Weigt M
    Nat Commun; 2021 Oct; 12(1):5800. PubMed ID: 34608136
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Geometry of protein shape and its evolutionary pattern for function prediction and characterization.
    Liang J
    Annu Int Conf IEEE Eng Med Biol Soc; 2009; 2009():2324-7. PubMed ID: 19965177
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Detecting remotely related proteins by their interactions and sequence similarity.
    Espadaler J; Aragüés R; Eswar N; Marti-Renom MA; Querol E; Avilés FX; Sali A; Oliva B
    Proc Natl Acad Sci U S A; 2005 May; 102(20):7151-6. PubMed ID: 15883372
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Computational protein design: validation and possible relevance as a tool for homology searching and fold recognition.
    Schmidt Am Busch M; Sedano A; Simonson T
    PLoS One; 2010 May; 5(5):e10410. PubMed ID: 20463972
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Identification of functionally conserved residues with the use of entropy-variability plots.
    Oliveira L; Paiva PB; Paiva AC; Vriend G
    Proteins; 2003 Sep; 52(4):544-52. PubMed ID: 12910454
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Comparison of sequence-based and structure-based phylogenetic trees of homologous proteins: Inferences on protein evolution.
    Balaji S; Srinivasan N
    J Biosci; 2007 Jan; 32(1):83-96. PubMed ID: 17426382
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Protein map: an alignment-free sequence comparison method based on various properties of amino acids.
    Yu C; Cheng SY; He RL; Yau SS
    Gene; 2011 Oct; 486(1-2):110-8. PubMed ID: 21803133
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.