BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

1438 related articles for article (PubMed ID: 30967123)

  • 1. Improving the sensitivity of long read overlap detection using grouped short k-mer matches.
    Du N; Chen J; Sun Y
    BMC Genomics; 2019 Apr; 20(Suppl 2):190. PubMed ID: 30967123
    [TBL] [Abstract][Full Text] [Related]  

  • 2. HISEA: HIerarchical SEed Aligner for PacBio data.
    Khiste N; Ilie L
    BMC Bioinformatics; 2017 Dec; 18(1):564. PubMed ID: 29258419
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Improve homology search sensitivity of PacBio data by correcting frameshifts.
    Du N; Sun Y
    Bioinformatics; 2016 Sep; 32(17):i529-i537. PubMed ID: 27587671
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A hybrid and scalable error correction algorithm for indel and substitution errors of long reads.
    Das AK; Goswami S; Lee K; Park SJ
    BMC Genomics; 2019 Dec; 20(Suppl 11):948. PubMed ID: 31856721
    [TBL] [Abstract][Full Text] [Related]  

  • 5. RepLong: de novo repeat identification using long read sequencing data.
    Guo R; Li YR; He S; Ou-Yang L; Sun Y; Zhu Z
    Bioinformatics; 2018 Apr; 34(7):1099-1107. PubMed ID: 29126180
    [TBL] [Abstract][Full Text] [Related]  

  • 6. LROD: An Overlap Detection Algorithm for Long Reads Based on
    Luo J; Chen R; Zhang X; Wang Y; Luo H; Yan C; Huo Z
    Front Genet; 2020; 11():632. PubMed ID: 32849762
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Improved assembly of noisy long reads by k-mer validation.
    Carvalho AB; Dupim EG; Goldstein G
    Genome Res; 2016 Dec; 26(12):1710-1720. PubMed ID: 27831497
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Evaluating long-read de novo assembly tools for eukaryotic genomes: insights and considerations.
    Cosma BM; Shirali Hossein Zade R; Jordan EN; van Lent P; Peng C; Pillay S; Abeel T
    Gigascience; 2022 Dec; 12():. PubMed ID: 38000912
    [TBL] [Abstract][Full Text] [Related]  

  • 9. NeatFreq: reference-free data reduction and coverage normalization for De Novo sequence assembly.
    McCorrison JM; Venepally P; Singh I; Fouts DE; Lasken RS; Methé BA
    BMC Bioinformatics; 2014 Nov; 15(1):357. PubMed ID: 25407910
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A sensitive short read homology search tool for paired-end read sequencing data.
    Techa-Angkoon P; Sun Y; Lei J
    BMC Bioinformatics; 2017 Oct; 18(Suppl 12):414. PubMed ID: 29072140
    [TBL] [Abstract][Full Text] [Related]  

  • 11. InteMAP: Integrated metagenomic assembly pipeline for NGS short reads.
    Lai B; Wang F; Wang X; Duan L; Zhu H
    BMC Bioinformatics; 2015 Aug; 16():244. PubMed ID: 26250558
    [TBL] [Abstract][Full Text] [Related]  

  • 12. SMRT sequencing only de novo assembly of the sugar beet (Beta vulgaris) chloroplast genome.
    Stadermann KB; Weisshaar B; Holtgräwe D
    BMC Bioinformatics; 2015 Sep; 16(1):295. PubMed ID: 26377912
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Evaluation and Validation of Assembling Corrected PacBio Long Reads for Microbial Genome Completion via Hybrid Approaches.
    Lin HH; Liao YC
    PLoS One; 2015; 10(12):e0144305. PubMed ID: 26641475
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Lerna: transformer architectures for configuring error correction tools for short- and long-read genome sequencing.
    Sharma A; Jain P; Mahgoub A; Zhou Z; Mahadik K; Chaterji S
    BMC Bioinformatics; 2022 Jan; 23(1):25. PubMed ID: 34991450
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A Sequence-Based Novel Approach for Quality Evaluation of Third-Generation Sequencing Reads.
    Zhang W; Huang N; Zheng J; Liao X; Wang J; Li HD
    Genes (Basel); 2019 Jan; 10(1):. PubMed ID: 30646604
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Overlap detection on long, error-prone sequencing reads via smooth q-gram.
    Song Y; Tang H; Zhang H; Zhang Q
    Bioinformatics; 2020 Dec; 36(19):4838-4845. PubMed ID: 32311007
    [TBL] [Abstract][Full Text] [Related]  

  • 17. MetaProb: accurate metagenomic reads binning based on probabilistic sequence signatures.
    Girotto S; Pizzi C; Comin M
    Bioinformatics; 2016 Sep; 32(17):i567-i575. PubMed ID: 27587676
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Evaluation of tools for long read RNA-seq splice-aware alignment.
    Križanovic K; Echchiki A; Roux J; Šikic M
    Bioinformatics; 2018 Mar; 34(5):748-754. PubMed ID: 29069314
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Iterative error correction of long sequencing reads maximizes accuracy and improves contig assembly.
    Sameith K; Roscito JG; Hiller M
    Brief Bioinform; 2017 Jan; 18(1):1-8. PubMed ID: 26868358
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets.
    Portik DM; Brown CT; Pierce-Ward NT
    BMC Bioinformatics; 2022 Dec; 23(1):541. PubMed ID: 36513983
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 72.