117 related articles for article (PubMed ID: 30975453)
1. Molecular Dynamics Simulations of Molecules in Uniform Flow.
Herrera-Rodríguez AM; Miletić V; Aponte-Santamaría C; Gräter F
Biophys J; 2019 May; 116(9):1579-1585. PubMed ID: 30975453
[TBL] [Abstract][Full Text] [Related]
2. Three Weaknesses for Three Perturbations: Comparing Protein Unfolding Under Shear, Force, and Thermal Stresses.
Languin-Cattoën O; Melchionna S; Derreumaux P; Stirnemann G; Sterpone F
J Phys Chem B; 2018 Dec; 122(50):11922-11930. PubMed ID: 30444631
[TBL] [Abstract][Full Text] [Related]
3. Complete all-atom hydrodynamics of protein unfolding in uniform flow.
Wang GM; Sandberg WC
Nanotechnology; 2010 Jun; 21(23):235101. PubMed ID: 20463391
[TBL] [Abstract][Full Text] [Related]
4. Atomic hydrodynamics of DNA: coil-uncoil-coil transitions in a wall-bounded shear flow.
Sandberg WC; Wang GM
Phys Rev E Stat Nonlin Soft Matter Phys; 2008 Dec; 78(6 Pt 1):061910. PubMed ID: 19256871
[TBL] [Abstract][Full Text] [Related]
5. Fluctuating hydrodynamics simulations of coarse-grained lipid membranes under steady-state conditions and in shear flow.
Brandt EG
Phys Rev E Stat Nonlin Soft Matter Phys; 2013 Jul; 88(1):012714. PubMed ID: 23944498
[TBL] [Abstract][Full Text] [Related]
6. Implementation of extended Lagrangian dynamics in GROMACS for polarizable simulations using the classical Drude oscillator model.
Lemkul JA; Roux B; van der Spoel D; MacKerell AD
J Comput Chem; 2015 Jul; 36(19):1473-9. PubMed ID: 25962472
[TBL] [Abstract][Full Text] [Related]
7. Nonequilibrium molecular dynamics simulation of water transport through carbon nanotube membranes at low pressure.
Wang L; Dumont RS; Dickson JM
J Chem Phys; 2012 Jul; 137(4):044102. PubMed ID: 22852592
[TBL] [Abstract][Full Text] [Related]
8. Semiflexible polymers under external fields confined to two dimensions.
Lamura A; Winkler RG
J Chem Phys; 2012 Dec; 137(24):244909. PubMed ID: 23277958
[TBL] [Abstract][Full Text] [Related]
9. Two-, three-, and four-state events occur in the mechanical unfolding of small protein L using molecular dynamics simulation.
Glyakina AV; Balabaev NK; Galzitskaya OV
Protein Pept Lett; 2010 Jan; 17(1):92-103. PubMed ID: 20214632
[TBL] [Abstract][Full Text] [Related]
10. Viscous flow simulation in a stenosis model using discrete particle dynamics: a comparison between DPD and CFD.
Feng R; Xenos M; Girdhar G; Kang W; Davenport JW; Deng Y; Bluestein D
Biomech Model Mechanobiol; 2012 Jan; 11(1-2):119-29. PubMed ID: 21369918
[TBL] [Abstract][Full Text] [Related]
11. Loading-device effects on the protein-unfolding mechanisms using molecular-dynamic simulations.
Lee M; Choi H; Yoon G; Na S
J Mol Graph Model; 2018 May; 81():162-167. PubMed ID: 29554493
[TBL] [Abstract][Full Text] [Related]
12. The influence of anesthesia and fluid-structure interaction on simulated shear stress patterns in the carotid bifurcation of mice.
De Wilde D; Trachet B; De Meyer G; Segers P
J Biomech; 2016 Sep; 49(13):2741-2747. PubMed ID: 27342001
[TBL] [Abstract][Full Text] [Related]
13. The QM-MM interface for CHARMM-deMon.
Lev B; Zhang R; de la Lande A; Salahub D; Noskov SY
J Comput Chem; 2010 Apr; 31(5):1015-23. PubMed ID: 20027641
[TBL] [Abstract][Full Text] [Related]
14. Effect of water concentration on the shock response of polyethylene glycol diacrylate (PEGDA) hydrogels: A molecular dynamics study.
Luo K; Yudewitz N; Subhash G; Spearot DE
J Mech Behav Biomed Mater; 2019 Feb; 90():30-39. PubMed ID: 30342277
[TBL] [Abstract][Full Text] [Related]
15. The effect of inlet and outlet boundary conditions in image-based CFD modeling of aortic flow.
Madhavan S; Kemmerling EMC
Biomed Eng Online; 2018 May; 17(1):66. PubMed ID: 29843730
[TBL] [Abstract][Full Text] [Related]
16. Non-equilibrium all-atom molecular dynamics simulations of free and tethered DNA molecules in nanochannel shear flows.
Wang GM; Sandberg WC
Nanotechnology; 2007 Apr; 18(13):135702. PubMed ID: 21730387
[TBL] [Abstract][Full Text] [Related]
17. Molecular dynamics study of nanoconfined water flow driven by rotating electric fields under realistic experimental conditions.
De Luca S; Todd BD; Hansen JS; Daivis PJ
Langmuir; 2014 Mar; 30(11):3095-109. PubMed ID: 24575940
[TBL] [Abstract][Full Text] [Related]
18. Nonequilibrium molecular dynamics of the rheological and structural properties of linear and branched molecules. Simple shear and poiseuille flows; instabilities and slip.
Castillo-Tejas J; Alvarado JF; González-Alatorre G; Luna-Bárcenas G; Sanchez IC; Macias-Salinas R; Manero O
J Chem Phys; 2005 Aug; 123(5):054907. PubMed ID: 16108693
[TBL] [Abstract][Full Text] [Related]
19. Structural dynamics of the box C/D RNA kink-turn and its complex with proteins: the role of the A-minor 0 interaction, long-residency water bridges, and structural ion-binding sites revealed by molecular simulations.
Spacková N; Réblová K; Sponer J
J Phys Chem B; 2010 Aug; 114(32):10581-93. PubMed ID: 20701388
[TBL] [Abstract][Full Text] [Related]
20. Introduction of steered molecular dynamics into UNRES coarse-grained simulations package.
Sieradzan AK; Jakubowski R
J Comput Chem; 2017 Mar; 38(8):553-562. PubMed ID: 28074486
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
