BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

182 related articles for article (PubMed ID: 30979905)

  • 1. Platanus-allee is a de novo haplotype assembler enabling a comprehensive access to divergent heterozygous regions.
    Kajitani R; Yoshimura D; Okuno M; Minakuchi Y; Kagoshima H; Fujiyama A; Kubokawa K; Kohara Y; Toyoda A; Itoh T
    Nat Commun; 2019 Apr; 10(1):1702. PubMed ID: 30979905
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads.
    Kajitani R; Toshimoto K; Noguchi H; Toyoda A; Ogura Y; Okuno M; Yabana M; Harada M; Nagayasu E; Maruyama H; Kohara Y; Fujiyama A; Hayashi T; Itoh T
    Genome Res; 2014 Aug; 24(8):1384-95. PubMed ID: 24755901
    [TBL] [Abstract][Full Text] [Related]  

  • 3. De novo phasing resolves haplotype sequences in complex plant genomes.
    Guk JY; Jang MJ; Choi JW; Lee YM; Kim S
    Plant Biotechnol J; 2022 Jun; 20(6):1031-1041. PubMed ID: 35332665
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A practical assembly guideline for genomes with various levels of heterozygosity.
    Mochizuki T; Sakamoto M; Tanizawa Y; Nakayama T; Tanifuji G; Kamikawa R; Nakamura Y
    Brief Bioinform; 2023 Sep; 24(6):. PubMed ID: 37798248
    [TBL] [Abstract][Full Text] [Related]  

  • 5. FastEtch: A Fast Sketch-Based Assembler for Genomes.
    Ghosh P; Kalyanaraman A
    IEEE/ACM Trans Comput Biol Bioinform; 2019; 16(4):1091-1106. PubMed ID: 28910776
    [TBL] [Abstract][Full Text] [Related]  

  • 6. A binning tool to reconstruct viral haplotypes from assembled contigs.
    Chen J; Shang J; Wang J; Sun Y
    BMC Bioinformatics; 2019 Nov; 20(1):544. PubMed ID: 31684876
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies.
    Roach MJ; Schmidt SA; Borneman AR
    BMC Bioinformatics; 2018 Nov; 19(1):460. PubMed ID: 30497373
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Assembly and RNA-free annotation of highly heterozygous genomes: The case of the thick-billed murre (Uria lomvia).
    Tigano A; Sackton TB; Friesen VL
    Mol Ecol Resour; 2018 Jan; 18(1):79-90. PubMed ID: 28815912
    [TBL] [Abstract][Full Text] [Related]  

  • 9. gcaPDA: a haplotype-resolved diploid assembler.
    Xie M; Yang L; Jiang C; Wu S; Luo C; Yang X; He L; Chen S; Deng T; Ye M; Yan J; Yang N
    BMC Bioinformatics; 2022 Feb; 23(1):68. PubMed ID: 35164674
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm.
    Cheng H; Concepcion GT; Feng X; Zhang H; Li H
    Nat Methods; 2021 Feb; 18(2):170-175. PubMed ID: 33526886
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Heterozygous genome assembly via binary classification of homologous sequence.
    Bodily PM; Fujimoto M; Ortega C; Okuda N; Price JC; Clement MJ; Snell Q
    BMC Bioinformatics; 2015; 16 Suppl 7(Suppl 7):S5. PubMed ID: 25952609
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Haplotype phasing by multi-assembly of shared haplotypes: phase-dependent interactions between rare variants.
    Halldórsson BV; Aguiar D; Istrail S
    Pac Symp Biocomput; 2011; ():88-99. PubMed ID: 21121036
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Benchmarking of de novo assembly algorithms for Nanopore data reveals optimal performance of OLC approaches.
    Cherukuri Y; Janga SC
    BMC Genomics; 2016 Aug; 17 Suppl 7(Suppl 7):507. PubMed ID: 27556636
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Tumor haplotype assembly algorithms for cancer genomics.
    Aguiar D; Wong WS; Istrail S
    Pac Symp Biocomput; 2014; ():3-14. PubMed ID: 24297529
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Consensus generation and variant detection by Celera Assembler.
    Denisov G; Walenz B; Halpern AL; Miller J; Axelrod N; Levy S; Sutton G
    Bioinformatics; 2008 Apr; 24(8):1035-40. PubMed ID: 18321888
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Diploid Genome Assembly of the Wine Grape Carménère.
    Minio A; Massonnet M; Figueroa-Balderas R; Castro A; Cantu D
    G3 (Bethesda); 2019 May; 9(5):1331-1337. PubMed ID: 30923135
    [TBL] [Abstract][Full Text] [Related]  

  • 17. GenHap: a novel computational method based on genetic algorithms for haplotype assembly.
    Tangherloni A; Spolaor S; Rundo L; Nobile MS; Cazzaniga P; Mauri G; Liò P; Merelli I; Besozzi D
    BMC Bioinformatics; 2019 Apr; 20(Suppl 4):172. PubMed ID: 30999845
    [TBL] [Abstract][Full Text] [Related]  

  • 18. dipSPAdes: Assembler for Highly Polymorphic Diploid Genomes.
    Safonova Y; Bankevich A; Pevzner PA
    J Comput Biol; 2015 Jun; 22(6):528-45. PubMed ID: 25734602
    [TBL] [Abstract][Full Text] [Related]  

  • 19. De novo repeat classification and fragment assembly.
    Pevzner PA; Tang H; Tesler G
    Genome Res; 2004 Sep; 14(9):1786-96. PubMed ID: 15342561
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Unzipping haplotypes in diploid and polyploid genomes.
    Zhang X; Wu R; Wang Y; Yu J; Tang H
    Comput Struct Biotechnol J; 2020; 18():66-72. PubMed ID: 31908732
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.