These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
3. DEXOM: Diversity-based enumeration of optimal context-specific metabolic networks. RodrÃguez-Mier P; Poupin N; de Blasio C; Le Cam L; Jourdan F PLoS Comput Biol; 2021 Feb; 17(2):e1008730. PubMed ID: 33571201 [TBL] [Abstract][Full Text] [Related]
4. Model-based assessment of mammalian cell metabolic functionalities using omics data. Richelle A; Kellman BP; Wenzel AT; Chiang AWT; Reagan T; Gutierrez JM; Joshi C; Li S; Liu JK; Masson H; Lee J; Li Z; Heirendt L; Trefois C; Juarez EF; Bath T; Borland D; Mesirov JP; Robasky K; Lewis NE Cell Rep Methods; 2021 Jul; 1(3):. PubMed ID: 34761247 [TBL] [Abstract][Full Text] [Related]
5. IDENTIFYING CANCER SPECIFIC METABOLIC SIGNATURES USING CONSTRAINT-BASED MODELS. Schultz A; Mehta S; Hu CW; Hoff FW; Horton TM; Kornblau SM; Qutub AA Pac Symp Biocomput; 2017; 22():485-496. PubMed ID: 27897000 [TBL] [Abstract][Full Text] [Related]
6. A strategy to detect metabolic changes induced by exposure to chemicals from large sets of condition-specific metabolic models computed with enumeration techniques. Fresnais L; Perin O; Riu A; Grall R; Ott A; Fromenty B; Gallardo JC; Stingl M; Frainay C; Jourdan F; Poupin N BMC Bioinformatics; 2024 Jul; 25(1):234. PubMed ID: 38992584 [TBL] [Abstract][Full Text] [Related]
7. Reconstruction of genome-scale metabolic models for 126 human tissues using mCADRE. Wang Y; Eddy JA; Price ND BMC Syst Biol; 2012 Dec; 6():153. PubMed ID: 23234303 [TBL] [Abstract][Full Text] [Related]
8. A benchmark-driven approach to reconstruct metabolic networks for studying cancer metabolism. Jamialahmadi O; Hashemi-Najafabadi S; Motamedian E; Romeo S; Bagheri F PLoS Comput Biol; 2019 Apr; 15(4):e1006936. PubMed ID: 31009458 [TBL] [Abstract][Full Text] [Related]
9. The FASTCORE Family: For the Fast Reconstruction of Compact Context-Specific Metabolic Networks Models. Pacheco MP; Sauter T Methods Mol Biol; 2018; 1716():101-110. PubMed ID: 29222750 [TBL] [Abstract][Full Text] [Related]
10. Applications of genome-scale metabolic network model in metabolic engineering. Kim B; Kim WJ; Kim DI; Lee SY J Ind Microbiol Biotechnol; 2015 Mar; 42(3):339-48. PubMed ID: 25465049 [TBL] [Abstract][Full Text] [Related]
13. Integration of transcriptomic data in a genome-scale metabolic model to investigate the link between obesity and breast cancer. Granata I; Troiano E; Sangiovanni M; Guarracino MR BMC Bioinformatics; 2019 Apr; 20(Suppl 4):162. PubMed ID: 30999849 [TBL] [Abstract][Full Text] [Related]
14. Identification of aberrant pathway and network activity from high-throughput data. Ochs MF; Karchin R; Ressom H; Gentleman R Pac Symp Biocomput; 2011; ():364-8. PubMed ID: 21121064 [TBL] [Abstract][Full Text] [Related]
15. Using Genome-Scale Metabolic Networks for Analysis, Visualization, and Integration of Targeted Metabolomics Data. Hattwell JPN; Hastings J; Casanueva O; Schirra HJ; Witting M Methods Mol Biol; 2020; 2104():361-386. PubMed ID: 31953826 [TBL] [Abstract][Full Text] [Related]
16. A Systematic Evaluation of Methods for Tailoring Genome-Scale Metabolic Models. Opdam S; Richelle A; Kellman B; Li S; Zielinski DC; Lewis NE Cell Syst; 2017 Mar; 4(3):318-329.e6. PubMed ID: 28215528 [TBL] [Abstract][Full Text] [Related]
17. An algorithm for the reduction of genome-scale metabolic network models to meaningful core models. Erdrich P; Steuer R; Klamt S BMC Syst Biol; 2015 Aug; 9():48. PubMed ID: 26286864 [TBL] [Abstract][Full Text] [Related]
18. Discrete nonparametric algorithms for outlier detection with genomic data. Ghosh D J Biopharm Stat; 2010 Mar; 20(2):193-208. PubMed ID: 20309754 [TBL] [Abstract][Full Text] [Related]
19. Advances in gap-filling genome-scale metabolic models and model-driven experiments lead to novel metabolic discoveries. Pan S; Reed JL Curr Opin Biotechnol; 2018 Jun; 51():103-108. PubMed ID: 29278837 [TBL] [Abstract][Full Text] [Related]