These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

169 related articles for article (PubMed ID: 31002670)

  • 1. CancerInSilico: An R/Bioconductor package for combining mathematical and statistical modeling to simulate time course bulk and single cell gene expression data in cancer.
    Sherman TD; Kagohara LT; Cao R; Cheng R; Satriano M; Considine M; Krigsfeld G; Ranaweera R; Tang Y; Jablonski SA; Stein-O'Brien G; Gaykalova DA; Weiner LM; Chung CH; Fertig EJ
    PLoS Comput Biol; 2018 Jun; 14(4):e1006935. PubMed ID: 31002670
    [TBL] [Abstract][Full Text] [Related]  

  • 2. mAPKL: R/ Bioconductor package for detecting gene exemplars and revealing their characteristics.
    Sakellariou A; Spyrou G
    BMC Bioinformatics; 2015 Sep; 16(1):291. PubMed ID: 26374744
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Next maSigPro: updating maSigPro bioconductor package for RNA-seq time series.
    Nueda MJ; Tarazona S; Conesa A
    Bioinformatics; 2014 Sep; 30(18):2598-602. PubMed ID: 24894503
    [TBL] [Abstract][Full Text] [Related]  

  • 4. HDCytoData: Collection of high-dimensional cytometry benchmark datasets in Bioconductor object formats.
    Weber LM; Soneson C
    F1000Res; 2019; 8():1459. PubMed ID: 31857895
    [TBL] [Abstract][Full Text] [Related]  

  • 5. runibic: a Bioconductor package for parallel row-based biclustering of gene expression data.
    Orzechowski P; Panszczyk A; Huang X; Moore JH
    Bioinformatics; 2018 Dec; 34(24):4302-4304. PubMed ID: 29939213
    [TBL] [Abstract][Full Text] [Related]  

  • 6. GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, miRNA and mRNA data in GDC.
    Li R; Qu H; Wang S; Wei J; Zhang L; Ma R; Lu J; Zhu J; Zhong WD; Jia Z
    Bioinformatics; 2018 Jul; 34(14):2515-2517. PubMed ID: 29509844
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Polyester: simulating RNA-seq datasets with differential transcript expression.
    Frazee AC; Jaffe AE; Langmead B; Leek JT
    Bioinformatics; 2015 Sep; 31(17):2778-84. PubMed ID: 25926345
    [TBL] [Abstract][Full Text] [Related]  

  • 8. miRBaseConverter: an R/Bioconductor package for converting and retrieving miRNA name, accession, sequence and family information in different versions of miRBase.
    Xu T; Su N; Liu L; Zhang J; Wang H; Zhang W; Gui J; Yu K; Li J; Le TD
    BMC Bioinformatics; 2018 Dec; 19(Suppl 19):514. PubMed ID: 30598108
    [TBL] [Abstract][Full Text] [Related]  

  • 9. lionessR: single sample network inference in R.
    Kuijjer ML; Hsieh PH; Quackenbush J; Glass K
    BMC Cancer; 2019 Oct; 19(1):1003. PubMed ID: 31653243
    [TBL] [Abstract][Full Text] [Related]  

  • 10. VegaMC: a R/bioconductor package for fast downstream analysis of large array comparative genomic hybridization datasets.
    Morganella S; Ceccarelli M
    Bioinformatics; 2012 Oct; 28(19):2512-4. PubMed ID: 22815357
    [TBL] [Abstract][Full Text] [Related]  

  • 11. GSAR: Bioconductor package for Gene Set analysis in R.
    Rahmatallah Y; Zybailov B; Emmert-Streib F; Glazko G
    BMC Bioinformatics; 2017 Jan; 18(1):61. PubMed ID: 28118818
    [TBL] [Abstract][Full Text] [Related]  

  • 12. CMA: a comprehensive Bioconductor package for supervised classification with high dimensional data.
    Slawski M; Daumer M; Boulesteix AL
    BMC Bioinformatics; 2008 Oct; 9():439. PubMed ID: 18925941
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Rcpi: R/Bioconductor package to generate various descriptors of proteins, compounds and their interactions.
    Cao DS; Xiao N; Xu QS; Chen AF
    Bioinformatics; 2015 Jan; 31(2):279-81. PubMed ID: 25246429
    [TBL] [Abstract][Full Text] [Related]  

  • 14. GeneExpressionSignature: an R package for discovering functional connections using gene expression signatures.
    Li F; Cao Y; Han L; Cui X; Xie D; Wang S; Bo X
    OMICS; 2013 Feb; 17(2):116-8. PubMed ID: 23374109
    [TBL] [Abstract][Full Text] [Related]  

  • 15. struct: an R/Bioconductor-based framework for standardized metabolomics data analysis and beyond.
    Lloyd GR; Jankevics A; Weber RJM
    Bioinformatics; 2021 Apr; 36(22-23):5551-5552. PubMed ID: 33325493
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Reproducible and replicable comparisons using SummarizedBenchmark.
    Kimes PK; Reyes A
    Bioinformatics; 2019 Jan; 35(1):137-139. PubMed ID: 30016409
    [TBL] [Abstract][Full Text] [Related]  

  • 17. mitch: multi-contrast pathway enrichment for multi-omics and single-cell profiling data.
    Kaspi A; Ziemann M
    BMC Genomics; 2020 Jun; 21(1):447. PubMed ID: 32600408
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Genefu: an R/Bioconductor package for computation of gene expression-based signatures in breast cancer.
    Gendoo DM; Ratanasirigulchai N; Schröder MS; Paré L; Parker JS; Prat A; Haibe-Kains B
    Bioinformatics; 2016 Apr; 32(7):1097-9. PubMed ID: 26607490
    [TBL] [Abstract][Full Text] [Related]  

  • 19. ROTS: An R package for reproducibility-optimized statistical testing.
    Suomi T; Seyednasrollah F; Jaakkola MK; Faux T; Elo LL
    PLoS Comput Biol; 2017 May; 13(5):e1005562. PubMed ID: 28542205
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Transcriptogramer: an R/Bioconductor package for transcriptional analysis based on protein-protein interaction.
    Morais DAA; Almeida RMC; Dalmolin RJS
    Bioinformatics; 2019 Aug; 35(16):2875-2876. PubMed ID: 30624611
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.