These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
2. Using single nuclei for RNA-seq to capture the transcriptome of postmortem neurons. Krishnaswami SR; Grindberg RV; Novotny M; Venepally P; Lacar B; Bhutani K; Linker SB; Pham S; Erwin JA; Miller JA; Hodge R; McCarthy JK; Kelder M; McCorrison J; Aevermann BD; Fuertes FD; Scheuermann RH; Lee J; Lein ES; Schork N; McConnell MJ; Gage FH; Lasken RS Nat Protoc; 2016 Mar; 11(3):499-524. PubMed ID: 26890679 [TBL] [Abstract][Full Text] [Related]
3. Isolating and cryopreserving pig skin cells for single-cell RNA sequencing study. Han L; Jara CP; Wang O; Shi Y; Wu X; Thibivilliers S; Wóycicki RK; Carlson MA; Velander WH; Araújo EP; Libault M; Zhang C; Lei Y PLoS One; 2022; 17(2):e0263869. PubMed ID: 35176067 [TBL] [Abstract][Full Text] [Related]
4. Sample processing and single cell RNA-sequencing of peripheral blood immune cells from COVID-19 patients. Yao C; Bora SA; Chen P; Goodridge HS; Gharib SA STAR Protoc; 2021 Jun; 2(2):100582. PubMed ID: 34002169 [TBL] [Abstract][Full Text] [Related]
5. The Impact of Blood Sample Processing on Ribonucleic Acid (RNA) Sequencing. Liu Z; Ouyang T; Yang Y; Sheng Y; Shi H; Liu Q; Bai Y; Ge Q Genes (Basel); 2024 Apr; 15(4):. PubMed ID: 38674435 [TBL] [Abstract][Full Text] [Related]
6. A method for rapid flow-cytometric isolation of endothelial nuclei and RNA from archived frozen brain tissue. Kimble AL; Silva J; Omar OM; Murphy M; Hensel JA; Nicholas SE; Jellison ER; Reese B; Murphy PA Lab Invest; 2022 Feb; 102(2):204-211. PubMed ID: 34775494 [TBL] [Abstract][Full Text] [Related]
7. Joint probabilistic modeling of single-cell multi-omic data with totalVI. Gayoso A; Steier Z; Lopez R; Regier J; Nazor KL; Streets A; Yosef N Nat Methods; 2021 Mar; 18(3):272-282. PubMed ID: 33589839 [TBL] [Abstract][Full Text] [Related]
8. FixNCut: single-cell genomics through reversible tissue fixation and dissociation. Jiménez-Gracia L; Marchese D; Nieto JC; Caratù G; Melón-Ardanaz E; Gudiño V; Roth S; Wise K; Ryan NK; Jensen KB; Hernando-Momblona X; Bernardes JP; Tran F; Sievers LK; Schreiber S; van den Berge M; Kole T; van der Velde PL; Nawijn MC; Rosenstiel P; Batlle E; Butler LM; Parish IA; Plummer J; Gut I; Salas A; Heyn H; Martelotto LG Genome Biol; 2024 Mar; 25(1):81. PubMed ID: 38553769 [TBL] [Abstract][Full Text] [Related]
9. The neutrotime transcriptional signature defines a single continuum of neutrophils across biological compartments. Grieshaber-Bouyer R; Radtke FA; Cunin P; Stifano G; Levescot A; Vijaykumar B; Nelson-Maney N; Blaustein RB; Monach PA; Nigrovic PA; Nat Commun; 2021 May; 12(1):2856. PubMed ID: 34001893 [TBL] [Abstract][Full Text] [Related]
10. BUTTERFLY: addressing the pooled amplification paradox with unique molecular identifiers in single-cell RNA-seq. Gustafsson J; Robinson J; Nielsen J; Pachter L Genome Biol; 2021 Jun; 22(1):174. PubMed ID: 34103073 [TBL] [Abstract][Full Text] [Related]
14. Unbiased visualization of single-cell genomic data with SCUBI. Hou W; Ji Z Cell Rep Methods; 2022 Jan; 2(1):. PubMed ID: 35224531 [TBL] [Abstract][Full Text] [Related]
15. scRNA-seq assessment of the human lung, spleen, and esophagus tissue stability after cold preservation. Madissoon E; Wilbrey-Clark A; Miragaia RJ; Saeb-Parsy K; Mahbubani KT; Georgakopoulos N; Harding P; Polanski K; Huang N; Nowicki-Osuch K; Fitzgerald RC; Loudon KW; Ferdinand JR; Clatworthy MR; Tsingene A; van Dongen S; Dabrowska M; Patel M; Stubbington MJT; Teichmann SA; Stegle O; Meyer KB Genome Biol; 2019 Dec; 21(1):1. PubMed ID: 31892341 [TBL] [Abstract][Full Text] [Related]
16. Cell Atlas technologies and insights into tissue architecture. Wilbrey-Clark A; Roberts K; Teichmann SA Biochem J; 2020 Apr; 477(8):1427-1442. PubMed ID: 32339226 [TBL] [Abstract][Full Text] [Related]
17. Characterization and decontamination of background noise in droplet-based single-cell protein expression data with DecontPro. Yin Y; Yajima M; Campbell JD Nucleic Acids Res; 2024 Jan; 52(1):e4. PubMed ID: 37973397 [TBL] [Abstract][Full Text] [Related]
18. Molecular mechanisms governing circulating immune cell heterogeneity across different species revealed by single-cell sequencing. Li Z; Sun C; Wang F; Wang X; Zhu J; Luo L; Ding X; Zhang Y; Ding P; Wang H; Pu M; Li Y; Wang S; Qin Q; Wei Y; Sun J; Wang X; Luo Y; Chen D; Qiu W Clin Transl Med; 2022 Jan; 12(1):e689. PubMed ID: 35092700 [TBL] [Abstract][Full Text] [Related]