174 related articles for article (PubMed ID: 31049585)
1. MyDGR: a server for identification and characterization of diversity-generating retroelements.
Sharifi F; Ye Y
Nucleic Acids Res; 2019 Jul; 47(W1):W289-W294. PubMed ID: 31049585
[TBL] [Abstract][Full Text] [Related]
2. Identification of diversity-generating retroelements in human microbiomes.
Ye Y
Int J Mol Sci; 2014 Aug; 15(8):14234-46. PubMed ID: 25196521
[TBL] [Abstract][Full Text] [Related]
3. First crAss-Like Phage Genome Encoding the Diversity-Generating Retroelement (DGR).
Morozova V; Fofanov M; Tikunova N; Babkin I; Morozov VV; Tikunov A
Viruses; 2020 May; 12(5):. PubMed ID: 32456083
[TBL] [Abstract][Full Text] [Related]
4. Targeted hypermutation of putative antigen sensors in multicellular bacteria.
Doré H; Eisenberg AR; Junkins EN; Leventhal GE; Ganesh A; Cordero OX; Paul BG; Valentine DL; O'Malley MA; Wilbanks EG
Proc Natl Acad Sci U S A; 2024 Feb; 121(9):e2316469121. PubMed ID: 38354254
[TBL] [Abstract][Full Text] [Related]
5. Genomic and Metagenomic Analysis of Diversity-Generating Retroelements Associated with Treponema denticola.
Nimkulrat S; Lee H; Doak TG; Ye Y
Front Microbiol; 2016; 7():852. PubMed ID: 27375574
[TBL] [Abstract][Full Text] [Related]
6. Discovery and characterization of the evolution, variation and functions of diversity-generating retroelements using thousands of genomes and metagenomes.
Yan F; Yu X; Duan Z; Lu J; Jia B; Qiao Y; Sun C; Wei C
BMC Genomics; 2019 Jul; 20(1):595. PubMed ID: 31324156
[TBL] [Abstract][Full Text] [Related]
7. Diversity-generating retroelements: natural variation, classification and evolution inferred from a large-scale genomic survey.
Wu L; Gingery M; Abebe M; Arambula D; Czornyj E; Handa S; Khan H; Liu M; Pohlschroder M; Shaw KL; Du A; Guo H; Ghosh P; Miller JF; Zimmerly S
Nucleic Acids Res; 2018 Jan; 46(1):11-24. PubMed ID: 29186518
[TBL] [Abstract][Full Text] [Related]
8. Diversity-generating Retroelements in Phage and Bacterial Genomes.
Guo H; Arambula D; Ghosh P; Miller JF
Microbiol Spectr; 2014 Dec; 2(6):. PubMed ID: 26104433
[TBL] [Abstract][Full Text] [Related]
9. DGR mutagenic transposition occurs via hypermutagenic reverse transcription primed by nicked template RNA.
Naorem SS; Han J; Wang S; Lee WR; Heng X; Miller JF; Guo H
Proc Natl Acad Sci U S A; 2017 Nov; 114(47):E10187-E10195. PubMed ID: 29109248
[TBL] [Abstract][Full Text] [Related]
10. Accelerated Evolution by Diversity-Generating Retroelements.
Macadangdang BR; Makanani SK; Miller JF
Annu Rev Microbiol; 2022 Sep; 76():389-411. PubMed ID: 35650669
[TBL] [Abstract][Full Text] [Related]
11. Analysis of a comprehensive dataset of diversity generating retroelements generated by the program DiGReF.
Schillinger T; Lisfi M; Chi J; Cullum J; Zingler N
BMC Genomics; 2012 Aug; 13():430. PubMed ID: 22928525
[TBL] [Abstract][Full Text] [Related]
12. CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences.
Liu C; Shi L; Zhu Y; Chen H; Zhang J; Lin X; Guan X
BMC Genomics; 2012 Dec; 13():715. PubMed ID: 23256920
[TBL] [Abstract][Full Text] [Related]
13. Template-assisted synthesis of adenine-mutagenized cDNA by a retroelement protein complex.
Handa S; Jiang Y; Tao S; Foreman R; Schinazi RF; Miller JF; Ghosh P
Nucleic Acids Res; 2018 Oct; 46(18):9711-9725. PubMed ID: 30007279
[TBL] [Abstract][Full Text] [Related]
14. Surface display of a massively variable lipoprotein by a Legionella diversity-generating retroelement.
Arambula D; Wong W; Medhekar BA; Guo H; Gingery M; Czornyj E; Liu M; Dey S; Ghosh P; Miller JF
Proc Natl Acad Sci U S A; 2013 May; 110(20):8212-7. PubMed ID: 23633572
[TBL] [Abstract][Full Text] [Related]
15. BAGET: a web server for the effortless retrieval of prokaryotic gene context and sequence.
Oberto J
Bioinformatics; 2008 Feb; 24(3):424-5. PubMed ID: 18056064
[TBL] [Abstract][Full Text] [Related]
16. CGKB: an annotation knowledge base for cowpea (Vigna unguiculata L.) methylation filtered genomic genespace sequences.
Chen X; Laudeman TW; Rushton PJ; Spraggins TA; Timko MP
BMC Bioinformatics; 2007 Apr; 8():129. PubMed ID: 17445272
[TBL] [Abstract][Full Text] [Related]
17. PADLOC: a web server for the identification of antiviral defence systems in microbial genomes.
Payne LJ; Meaden S; Mestre MR; Palmer C; Toro N; Fineran PC; Jackson SA
Nucleic Acids Res; 2022 Jul; 50(W1):W541-W550. PubMed ID: 35639517
[TBL] [Abstract][Full Text] [Related]
18. Target site recognition by a diversity-generating retroelement.
Guo H; Tse LV; Nieh AW; Czornyj E; Williams S; Oukil S; Liu VB; Miller JF
PLoS Genet; 2011 Dec; 7(12):e1002414. PubMed ID: 22194701
[TBL] [Abstract][Full Text] [Related]
19. Identification and classification of reverse transcriptases in bacterial genomes and metagenomes.
Sharifi F; Ye Y
Nucleic Acids Res; 2022 Mar; 50(5):e29. PubMed ID: 34904653
[TBL] [Abstract][Full Text] [Related]
20. Retroelement-guided protein diversification abounds in vast lineages of Bacteria and Archaea.
Paul BG; Burstein D; Castelle CJ; Handa S; Arambula D; Czornyj E; Thomas BC; Ghosh P; Miller JF; Banfield JF; Valentine DL
Nat Microbiol; 2017 Apr; 2():17045. PubMed ID: 28368387
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
