These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

200 related articles for article (PubMed ID: 31059255)

  • 61. Modeling Structural Dynamics of Biomolecular Complexes by Coarse-Grained Molecular Simulations.
    Takada S; Kanada R; Tan C; Terakawa T; Li W; Kenzaki H
    Acc Chem Res; 2015 Dec; 48(12):3026-35. PubMed ID: 26575522
    [TBL] [Abstract][Full Text] [Related]  

  • 62. Biased coarse-grained molecular dynamics simulation approach for flexible fitting of X-ray structure into cryo electron microscopy maps.
    Grubisic I; Shokhirev MN; Orzechowski M; Miyashita O; Tama F
    J Struct Biol; 2010 Jan; 169(1):95-105. PubMed ID: 19800974
    [TBL] [Abstract][Full Text] [Related]  

  • 63. Accurate Three States Model for Amino Acids with Two Chemically Coupled Titrating Sites in Explicit Solvent Atomistic Constant pH Simulations and pK(a) Calculations.
    Dobrev P; Donnini S; Groenhof G; Grubmüller H
    J Chem Theory Comput; 2017 Jan; 13(1):147-160. PubMed ID: 27966355
    [TBL] [Abstract][Full Text] [Related]  

  • 64. An implicit divalent counterion force field for RNA molecular dynamics.
    Henke PS; Mak CH
    J Chem Phys; 2016 Mar; 144(10):105104. PubMed ID: 26979708
    [TBL] [Abstract][Full Text] [Related]  

  • 65. PACSAB: Coarse-Grained Force Field for the Study of Protein-Protein Interactions and Conformational Sampling in Multiprotein Systems.
    Emperador A; Sfriso P; Villarreal MA; Gelpí JL; Orozco M
    J Chem Theory Comput; 2015 Dec; 11(12):5929-38. PubMed ID: 26597989
    [TBL] [Abstract][Full Text] [Related]  

  • 66. High-Resolution Coarse-Grained Modeling Using Oriented Coarse-Grained Sites.
    Haxton TK
    J Chem Theory Comput; 2015 Mar; 11(3):1244-54. PubMed ID: 26579771
    [TBL] [Abstract][Full Text] [Related]  

  • 67. Coarse-Grained Protein Models and Their Applications.
    Kmiecik S; Gront D; Kolinski M; Wieteska L; Dawid AE; Kolinski A
    Chem Rev; 2016 Jul; 116(14):7898-936. PubMed ID: 27333362
    [TBL] [Abstract][Full Text] [Related]  

  • 68. Sampling of near-native protein conformations during protein structure refinement using a coarse-grained model, normal modes, and molecular dynamics simulations.
    Stumpff-Kane AW; Maksimiak K; Lee MS; Feig M
    Proteins; 2008 Mar; 70(4):1345-56. PubMed ID: 17876825
    [TBL] [Abstract][Full Text] [Related]  

  • 69. Coarse-grained force field for the nucleosome from self-consistent multiscaling.
    Voltz K; Trylska J; Tozzini V; Kurkal-Siebert V; Langowski J; Smith J
    J Comput Chem; 2008 Jul; 29(9):1429-39. PubMed ID: 18270964
    [TBL] [Abstract][Full Text] [Related]  

  • 70. Coupling between protonation and conformation in cytochrome c oxidase: Insights from constant-pH MD simulations.
    Oliveira AS; Campos SR; Baptista AM; Soares CM
    Biochim Biophys Acta; 2016 Jun; 1857(6):759-71. PubMed ID: 27033303
    [TBL] [Abstract][Full Text] [Related]  

  • 71. Phase separation behavior of mixed lipid systems at neutral and low pH: coarse-grained simulations with DMD/LIME.
    Curtis EM; Xiao X; Sofou S; Hall CK
    Langmuir; 2015 Jan; 31(3):1086-94. PubMed ID: 25549801
    [TBL] [Abstract][Full Text] [Related]  

  • 72. How Reactive are Druggable Cysteines in Protein Kinases?
    Awoonor-Williams E; Rowley CN
    J Chem Inf Model; 2018 Sep; 58(9):1935-1946. PubMed ID: 30118220
    [TBL] [Abstract][Full Text] [Related]  

  • 73. Recapturing the Correlated Motions of Protein Using Coarse- Grained Models.
    Lu Y; Salsbury FR
    Protein Pept Lett; 2015; 22(7):654-9. PubMed ID: 26100687
    [TBL] [Abstract][Full Text] [Related]  

  • 74. Predicting large-scale conformational changes in proteins using energy-weighted normal modes.
    Palmer DS; Jensen F
    Proteins; 2011 Oct; 79(10):2778-93. PubMed ID: 21905106
    [TBL] [Abstract][Full Text] [Related]  

  • 75. Potential of mean force of water-proton bath and molecular dynamic simulation of proteins at constant pH.
    Vorobjev YN
    J Comput Chem; 2012 Mar; 33(8):832-42. PubMed ID: 22278814
    [TBL] [Abstract][Full Text] [Related]  

  • 76. Protein-RNA complexation driven by the charge regulation mechanism.
    Barroso da Silva FL; Derreumaux P; Pasquali S
    Biochem Biophys Res Commun; 2018 Mar; 498(2):264-273. PubMed ID: 28709871
    [TBL] [Abstract][Full Text] [Related]  

  • 77. From residue coevolution to protein conformational ensembles and functional dynamics.
    Sutto L; Marsili S; Valencia A; Gervasio FL
    Proc Natl Acad Sci U S A; 2015 Nov; 112(44):13567-72. PubMed ID: 26487681
    [TBL] [Abstract][Full Text] [Related]  

  • 78. Electrostatics analysis of the mutational and pH effects of the N-terminal domain self-association of the major ampullate spidroin.
    Barroso da Silva FL; Pasquali S; Derreumaux P; Dias LG
    Soft Matter; 2016 Jul; 12(25):5600-12. PubMed ID: 27250106
    [TBL] [Abstract][Full Text] [Related]  

  • 79. Coarse-grained force fields for molecular simulations.
    Barnoud J; Monticelli L
    Methods Mol Biol; 2015; 1215():125-49. PubMed ID: 25330962
    [TBL] [Abstract][Full Text] [Related]  

  • 80. Molecular dynamics simulations of peptides and proteins with a continuum electrostatic model based on screened Coulomb potentials.
    Hassan SA; Mehler EL; Zhang D; Weinstein H
    Proteins; 2003 Apr; 51(1):109-25. PubMed ID: 12596268
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 10.