294 related articles for article (PubMed ID: 31064768)
21. Consensus assessment of the contamination level of publicly available cyanobacterial genomes.
Cornet L; Meunier L; Van Vlierberghe M; Léonard RR; Durieu B; Lara Y; Misztak A; Sirjacobs D; Javaux EJ; Philippe H; Wilmotte A; Baurain D
PLoS One; 2018; 13(7):e0200323. PubMed ID: 30044797
[TBL] [Abstract][Full Text] [Related]
22. ORFer--retrieval of protein sequences and open reading frames from GenBank and storage into relational databases or text files.
Büssow K; Hoffmann S; Sievert V
BMC Bioinformatics; 2002 Dec; 3():40. PubMed ID: 12493080
[TBL] [Abstract][Full Text] [Related]
23. A shotgun approach to discovering and reconstructing consensus retrotransposons ex novo from dense contigs of short sequences derived from Genbank Genome Survey Sequence database records.
Laten HM; Mogil LS; Wright LN
Gene; 2009 Dec; 448(2):168-73. PubMed ID: 19560526
[TBL] [Abstract][Full Text] [Related]
24. Global repeat discovery and estimation of genomic copy number in a large, complex genome using a high-throughput 454 sequence survey.
Swaminathan K; Varala K; Hudson ME
BMC Genomics; 2007 May; 8():132. PubMed ID: 17524145
[TBL] [Abstract][Full Text] [Related]
25. Ten years of bacterial genome sequencing: comparative-genomics-based discoveries.
Binnewies TT; Motro Y; Hallin PF; Lund O; Dunn D; La T; Hampson DJ; Bellgard M; Wassenaar TM; Ussery DW
Funct Integr Genomics; 2006 Jul; 6(3):165-85. PubMed ID: 16773396
[TBL] [Abstract][Full Text] [Related]
26. PRAP: an ab initio software package for automated genome-wide analysis of DNA repeats for prokaryotes.
Chen GL; Chang YJ; Hsueh CH
Bioinformatics; 2013 Nov; 29(21):2683-9. PubMed ID: 23958725
[TBL] [Abstract][Full Text] [Related]
27. 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life.
Mukherjee S; Seshadri R; Varghese NJ; Eloe-Fadrosh EA; Meier-Kolthoff JP; Göker M; Coates RC; Hadjithomas M; Pavlopoulos GA; Paez-Espino D; Yoshikuni Y; Visel A; Whitman WB; Garrity GM; Eisen JA; Hugenholtz P; Pati A; Ivanova NN; Woyke T; Klenk HP; Kyrpides NC
Nat Biotechnol; 2017 Jul; 35(7):676-683. PubMed ID: 28604660
[TBL] [Abstract][Full Text] [Related]
28. Improvements and impacts of GRCh38 human reference on high throughput sequencing data analysis.
Guo Y; Dai Y; Yu H; Zhao S; Samuels DC; Shyr Y
Genomics; 2017 Mar; 109(2):83-90. PubMed ID: 28131802
[TBL] [Abstract][Full Text] [Related]
29.
Todd SM; Settlage RE; Lahmers KK; Slade DJ
mSphere; 2018 Jul; 3(4):. PubMed ID: 29976645
[TBL] [Abstract][Full Text] [Related]
30. ContigScape: a Cytoscape plugin facilitating microbial genome gap closing.
Tang B; Wang Q; Yang M; Xie F; Zhu Y; Zhuo Y; Wang S; Gao H; Ding X; Zhang L; Zhao G; Zheng H
BMC Genomics; 2013 Apr; 14():289. PubMed ID: 23627759
[TBL] [Abstract][Full Text] [Related]
31. Update on RefSeq microbial genomes resources.
Tatusova T; Ciufo S; Federhen S; Fedorov B; McVeigh R; O'Neill K; Tolstoy I; Zaslavsky L
Nucleic Acids Res; 2015 Jan; 43(Database issue):D599-605. PubMed ID: 25510495
[TBL] [Abstract][Full Text] [Related]
32. Missing genes in the annotation of prokaryotic genomes.
Warren AS; Archuleta J; Feng WC; Setubal JC
BMC Bioinformatics; 2010 Mar; 11():131. PubMed ID: 20230630
[TBL] [Abstract][Full Text] [Related]
33. Complete genome sequence of Methanobacterium thermoautotrophicum deltaH: functional analysis and comparative genomics.
Smith DR; Doucette-Stamm LA; Deloughery C; Lee H; Dubois J; Aldredge T; Bashirzadeh R; Blakely D; Cook R; Gilbert K; Harrison D; Hoang L; Keagle P; Lumm W; Pothier B; Qiu D; Spadafora R; Vicaire R; Wang Y; Wierzbowski J; Gibson R; Jiwani N; Caruso A; Bush D; Reeve JN
J Bacteriol; 1997 Nov; 179(22):7135-55. PubMed ID: 9371463
[TBL] [Abstract][Full Text] [Related]
34. Accurate and complete genomes from metagenomes.
Chen LX; Anantharaman K; Shaiber A; Eren AM; Banfield JF
Genome Res; 2020 Mar; 30(3):315-333. PubMed ID: 32188701
[TBL] [Abstract][Full Text] [Related]
35. Comparison of archaeal and bacterial genomes: computer analysis of protein sequences predicts novel functions and suggests a chimeric origin for the archaea.
Koonin EV; Mushegian AR; Galperin MY; Walker DR
Mol Microbiol; 1997 Aug; 25(4):619-37. PubMed ID: 9379893
[TBL] [Abstract][Full Text] [Related]
36. Genomic BLAST: custom-defined virtual databases for complete and unfinished genomes.
Cummings L; Riley L; Black L; Souvorov A; Resenchuk S; Dondoshansky I; Tatusova T
FEMS Microbiol Lett; 2002 Nov; 216(2):133-8. PubMed ID: 12435493
[TBL] [Abstract][Full Text] [Related]
37. Novel coding regions in four complete archaeal genomes.
Raghavan S; Ouzounis CA
Nucleic Acids Res; 1999 Nov; 27(22):4405-8. PubMed ID: 10536149
[TBL] [Abstract][Full Text] [Related]
38. Analysis of tandem repeats found in 44 prokaryotic genomes.
Mizuta S; Munakata H; Aimaiti A; Oya I; Oosawa K; Shimizu T
In Silico Biol; 2006; 6(1-2):147-59. PubMed ID: 17009421
[TBL] [Abstract][Full Text] [Related]
39. Assembly of long, error-prone reads using repeat graphs.
Kolmogorov M; Yuan J; Lin Y; Pevzner PA
Nat Biotechnol; 2019 May; 37(5):540-546. PubMed ID: 30936562
[TBL] [Abstract][Full Text] [Related]
40. How complete are "complete" genome assemblies?-An avian perspective.
Peona V; Weissensteiner MH; Suh A
Mol Ecol Resour; 2018 Nov; 18(6):1188-1195. PubMed ID: 30035372
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
