These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

196 related articles for article (PubMed ID: 31075275)

  • 1. PhyreRisk: A Dynamic Web Application to Bridge Genomics, Proteomics and 3D Structural Data to Guide Interpretation of Human Genetic Variants.
    Ofoegbu TC; David A; Kelley LA; Mezulis S; Islam SA; Mersmann SF; Strömich L; Vakser IA; Houlston RS; Sternberg MJE
    J Mol Biol; 2019 Jun; 431(13):2460-2466. PubMed ID: 31075275
    [TBL] [Abstract][Full Text] [Related]  

  • 2. G23D: Online tool for mapping and visualization of genomic variants on 3D protein structures.
    Solomon O; Kunik V; Simon A; Kol N; Barel O; Lev A; Amariglio N; Somech R; Rechavi G; Eyal E
    BMC Genomics; 2016 Aug; 17(1):681. PubMed ID: 27565432
    [TBL] [Abstract][Full Text] [Related]  

  • 3. 3D-GENOMICS: a database to compare structural and functional annotations of proteins between sequenced genomes.
    Fleming K; Müller A; MacCallum RM; Sternberg MJ
    Nucleic Acids Res; 2004 Jan; 32(Database issue):D245-50. PubMed ID: 14681404
    [TBL] [Abstract][Full Text] [Related]  

  • 4. G2S: a web-service for annotating genomic variants on 3D protein structures.
    Wang J; Sheridan R; Sumer SO; Schultz N; Xu D; Gao J
    Bioinformatics; 2018 Jun; 34(11):1949-1950. PubMed ID: 29385402
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Genomics 2 Proteins portal: a resource and discovery tool for linking genetic screening outputs to protein sequences and structures.
    Kwon S; Safer J; Nguyen DT; Hoksza D; May P; Arbesfeld JA; Rubin AF; Campbell AJ; Burgin A; Iqbal S
    Nat Methods; 2024 Oct; 21(10):1947-1957. PubMed ID: 39294369
    [TBL] [Abstract][Full Text] [Related]  

  • 6. VarSite: Disease variants and protein structure.
    Laskowski RA; Stephenson JD; Sillitoe I; Orengo CA; Thornton JM
    Protein Sci; 2020 Jan; 29(1):111-119. PubMed ID: 31606900
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Missense3D-DB web catalogue: an atom-based analysis and repository of 4M human protein-coding genetic variants.
    Khanna T; Hanna G; Sternberg MJE; David A
    Hum Genet; 2021 May; 140(5):805-812. PubMed ID: 33502607
    [TBL] [Abstract][Full Text] [Related]  

  • 8. VariantValidator: Accurate validation, mapping, and formatting of sequence variation descriptions.
    Freeman PJ; Hart RK; Gretton LJ; Brookes AJ; Dalgleish R
    Hum Mutat; 2018 Jan; 39(1):61-68. PubMed ID: 28967166
    [TBL] [Abstract][Full Text] [Related]  

  • 9. VarMap: a web tool for mapping genomic coordinates to protein sequence and structure and retrieving protein structural annotations.
    Stephenson JD; Laskowski RA; Nightingale A; Hurles ME; Thornton JM
    Bioinformatics; 2019 Nov; 35(22):4854-4856. PubMed ID: 31192369
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Can Predicted Protein 3D Structures Provide Reliable Insights into whether Missense Variants Are Disease Associated?
    Ittisoponpisan S; Islam SA; Khanna T; Alhuzimi E; David A; Sternberg MJE
    J Mol Biol; 2019 May; 431(11):2197-2212. PubMed ID: 30995449
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Pathogenic missense protein variants affect different functional pathways and proteomic features than healthy population variants.
    Laddach A; Ng JCF; Fraternali F
    PLoS Biol; 2021 Apr; 19(4):e3001207. PubMed ID: 33909605
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Human protein reference database as a discovery resource for proteomics.
    Peri S; Navarro JD; Kristiansen TZ; Amanchy R; Surendranath V; Muthusamy B; Gandhi TK; Chandrika KN; Deshpande N; Suresh S; Rashmi BP; Shanker K; Padma N; Niranjan V; Harsha HC; Talreja N; Vrushabendra BM; Ramya MA; Yatish AJ; Joy M; Shivashankar HN; Kavitha MP; Menezes M; Choudhury DR; Ghosh N; Saravana R; Chandran S; Mohan S; Jonnalagadda CK; Prasad CK; Kumar-Sinha C; Deshpande KS; Pandey A
    Nucleic Acids Res; 2004 Jan; 32(Database issue):D497-501. PubMed ID: 14681466
    [TBL] [Abstract][Full Text] [Related]  

  • 13. TSTMP: target selection for structural genomics of human transmembrane proteins.
    Varga J; Dobson L; Reményi I; Tusnády GE
    Nucleic Acids Res; 2017 Jan; 45(D1):D325-D330. PubMed ID: 27924015
    [TBL] [Abstract][Full Text] [Related]  

  • 14. BioAfrica's HIV-1 proteomics resource: combining protein data with bioinformatics tools.
    Doherty RS; De Oliveira T; Seebregts C; Danaviah S; Gordon M; Cassol S
    Retrovirology; 2005 Mar; 2():18. PubMed ID: 15757512
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Ensembl 2015.
    Cunningham F; Amode MR; Barrell D; Beal K; Billis K; Brent S; Carvalho-Silva D; Clapham P; Coates G; Fitzgerald S; Gil L; Girón CG; Gordon L; Hourlier T; Hunt SE; Janacek SH; Johnson N; Juettemann T; Kähäri AK; Keenan S; Martin FJ; Maurel T; McLaren W; Murphy DN; Nag R; Overduin B; Parker A; Patricio M; Perry E; Pignatelli M; Riat HS; Sheppard D; Taylor K; Thormann A; Vullo A; Wilder SP; Zadissa A; Aken BL; Birney E; Harrow J; Kinsella R; Muffato M; Ruffier M; Searle SM; Spudich G; Trevanion SJ; Yates A; Zerbino DR; Flicek P
    Nucleic Acids Res; 2015 Jan; 43(Database issue):D662-9. PubMed ID: 25352552
    [TBL] [Abstract][Full Text] [Related]  

  • 16. The Genomic Threading Database: a comprehensive resource for structural annotations of the genomes from key organisms.
    McGuffin LJ; Street SA; Bryson K; Sørensen SA; Jones DT
    Nucleic Acids Res; 2004 Jan; 32(Database issue):D196-9. PubMed ID: 14681393
    [TBL] [Abstract][Full Text] [Related]  

  • 17. DBAli tools: mining the protein structure space.
    Marti-Renom MA; Pieper U; Madhusudhan MS; Rossi A; Eswar N; Davis FP; Al-Shahrour F; Dopazo J; Sali A
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W393-7. PubMed ID: 17478513
    [TBL] [Abstract][Full Text] [Related]  

  • 18. SeqTailor: a user-friendly webserver for the extraction of DNA or protein sequences from next-generation sequencing data.
    Zhang P; Boisson B; Stenson PD; Cooper DN; Casanova JL; Abel L; Itan Y
    Nucleic Acids Res; 2019 Jul; 47(W1):W623-W631. PubMed ID: 31045209
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Seshat: A Web service for accurate annotation, validation, and analysis of TP53 variants generated by conventional and next-generation sequencing.
    Tikkanen T; Leroy B; Fournier JL; Risques RA; Malcikova J; Soussi T
    Hum Mutat; 2018 Jul; 39(7):925-933. PubMed ID: 29696732
    [TBL] [Abstract][Full Text] [Related]  

  • 20. The impact of structural genomics: the first quindecennial.
    Grabowski M; Niedzialkowska E; Zimmerman MD; Minor W
    J Struct Funct Genomics; 2016 Mar; 17(1):1-16. PubMed ID: 26935210
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.