175 related articles for article (PubMed ID: 31095856)
1. PASS: A Proteomics Alternative Splicing Screening Pipeline.
Wu P; Pu L; Deng B; Li Y; Chen Z; Liu W
Proteomics; 2019 Jul; 19(13):e1900041. PubMed ID: 31095856
[TBL] [Abstract][Full Text] [Related]
2. Identification of novel alternative splicing biomarkers for breast cancer with LC/MS/MS and RNA-Seq.
Zhang F; Deng CK; Wang M; Deng B; Barber R; Huang G
BMC Bioinformatics; 2020 Dec; 21(Suppl 9):541. PubMed ID: 33272210
[TBL] [Abstract][Full Text] [Related]
3. Identification of Differentially Expressed Splice Variants by the Proteogenomic Pipeline Splicify.
Komor MA; Pham TV; Hiemstra AC; Piersma SR; Bolijn AS; Schelfhorst T; Delis-van Diemen PM; Tijssen M; Sebra RP; Ashby M; Meijer GA; Jimenez CR; Fijneman RJA
Mol Cell Proteomics; 2017 Oct; 16(10):1850-1863. PubMed ID: 28747380
[TBL] [Abstract][Full Text] [Related]
4. Discovery of novel genes and gene isoforms by integrating transcriptomic and proteomic profiling from mouse liver.
Wu P; Zhang H; Lin W; Hao Y; Ren L; Zhang C; Li N; Wei H; Jiang Y; He F
J Proteome Res; 2014 May; 13(5):2409-19. PubMed ID: 24717071
[TBL] [Abstract][Full Text] [Related]
5. Determining Alternative Protein Isoform Expression Using RNA Sequencing and Mass Spectrometry.
Han Y; Wright JM; Lau E; Lam MPY
STAR Protoc; 2020 Dec; 1(3):100138. PubMed ID: 33377032
[TBL] [Abstract][Full Text] [Related]
6. Alternative Splicing May Not Be the Key to Proteome Complexity.
Tress ML; Abascal F; Valencia A
Trends Biochem Sci; 2017 Feb; 42(2):98-110. PubMed ID: 27712956
[TBL] [Abstract][Full Text] [Related]
7. Splice-Junction-Based Mapping of Alternative Isoforms in the Human Proteome.
Lau E; Han Y; Williams DR; Thomas CT; Shrestha R; Wu JC; Lam MPY
Cell Rep; 2019 Dec; 29(11):3751-3765.e5. PubMed ID: 31825849
[TBL] [Abstract][Full Text] [Related]
8. Identification of Alternative Splicing in Proteomes of Human Melanoma Cell Lines without RNA Sequencing Data.
Lobas AA; Solovyeva EM; Levitsky LI; Goncharov AO; Lyssuk EY; Larin SS; Moshkovskii SA; Gorshkov MV
Int J Mol Sci; 2023 Jan; 24(3):. PubMed ID: 36768787
[TBL] [Abstract][Full Text] [Related]
9. Isoform-Level Interpretation of High-Throughput Proteomics Data Enabled by Deep Integration with RNA-seq.
Carlyle BC; Kitchen RR; Zhang J; Wilson RS; Lam TT; Rozowsky JS; Williams KR; Sestan N; Gerstein MB; Nairn AC
J Proteome Res; 2018 Oct; 17(10):3431-3444. PubMed ID: 30125121
[TBL] [Abstract][Full Text] [Related]
10. Identification of Splice Variants and Isoforms in Transcriptomics and Proteomics.
Su T; Hollas MAR; Fellers RT; Kelleher NL
Annu Rev Biomed Data Sci; 2023 Aug; 6():357-376. PubMed ID: 37561601
[TBL] [Abstract][Full Text] [Related]
11. The utility of mass spectrometry-based proteomic data for validation of novel alternative splice forms reconstructed from RNA-Seq data: a preliminary assessment.
Ning K; Nesvizhskii AI
BMC Bioinformatics; 2010 Dec; 11 Suppl 11(Suppl 11):S14. PubMed ID: 21172049
[TBL] [Abstract][Full Text] [Related]
12. Enhanced protein isoform characterization through long-read proteogenomics.
Miller RM; Jordan BT; Mehlferber MM; Jeffery ED; Chatzipantsiou C; Kaur S; Millikin RJ; Dai Y; Tiberi S; Castaldi PJ; Shortreed MR; Luckey CJ; Conesa A; Smith LM; Deslattes Mays A; Sheynkman GM
Genome Biol; 2022 Mar; 23(1):69. PubMed ID: 35241129
[TBL] [Abstract][Full Text] [Related]
13. ProteomeGenerator: A Framework for Comprehensive Proteomics Based on de Novo Transcriptome Assembly and High-Accuracy Peptide Mass Spectral Matching.
Cifani P; Dhabaria A; Chen Z; Yoshimi A; Kawaler E; Abdel-Wahab O; Poirier JT; Kentsis A
J Proteome Res; 2018 Nov; 17(11):3681-3692. PubMed ID: 30295032
[TBL] [Abstract][Full Text] [Related]
14. Integrated Transcriptomic-Proteomic Analysis Using a Proteogenomic Workflow Refines Rat Genome Annotation.
Kumar D; Yadav AK; Jia X; Mulvenna J; Dash D
Mol Cell Proteomics; 2016 Jan; 15(1):329-39. PubMed ID: 26560066
[TBL] [Abstract][Full Text] [Related]
15. Read-Split-Run: an improved bioinformatics pipeline for identification of genome-wide non-canonical spliced regions using RNA-Seq data.
Bai Y; Kinne J; Donham B; Jiang F; Ding L; Hassler JR; Kaufman RJ
BMC Genomics; 2016 Aug; 17 Suppl 7(Suppl 7):503. PubMed ID: 27556805
[TBL] [Abstract][Full Text] [Related]
16. Using Galaxy-P to leverage RNA-Seq for the discovery of novel protein variations.
Sheynkman GM; Johnson JE; Jagtap PD; Shortreed MR; Onsongo G; Frey BL; Griffin TJ; Smith LM
BMC Genomics; 2014 Aug; 15(1):703. PubMed ID: 25149441
[TBL] [Abstract][Full Text] [Related]
17. PGA: an R/Bioconductor package for identification of novel peptides using a customized database derived from RNA-Seq.
Wen B; Xu S; Zhou R; Zhang B; Wang X; Liu X; Xu X; Liu S
BMC Bioinformatics; 2016 Jun; 17(1):244. PubMed ID: 27316337
[TBL] [Abstract][Full Text] [Related]
18. Proteomic Evidence for In-Frame and Out-of-Frame Alternatively Spliced Isoforms in Human and Mouse.
Ramalho RF; Li S; Radivojac P; Hahn MW
IEEE/ACM Trans Comput Biol Bioinform; 2018; 15(4):1284-1289. PubMed ID: 26394435
[TBL] [Abstract][Full Text] [Related]
19. Identification of a novel protein isoform derived from cancer-related splicing variants using combined analysis of transcriptome and proteome.
Hatakeyama K; Ohshima K; Fukuda Y; Ogura S; Terashima M; Yamaguchi K; Mochizuki T
Proteomics; 2011 Jun; 11(11):2275-82. PubMed ID: 21548097
[TBL] [Abstract][Full Text] [Related]
20. Computation-assisted targeted proteomics of alternative splicing protein isoforms in the human heart.
Han Y; Wood SD; Wright JM; Dostal V; Lau E; Lam MPY
J Mol Cell Cardiol; 2021 May; 154():92-96. PubMed ID: 33549679
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]