190 related articles for article (PubMed ID: 31105932)
1. An accessible GenePattern notebook for the copy number variation analysis of Illumina Infinium DNA methylation arrays.
Mah CK; Mesirov JP; Chavez L
F1000Res; 2018; 7():. PubMed ID: 31105932
[TBL] [Abstract][Full Text] [Related]
2. Using high-density DNA methylation arrays to profile copy number alterations.
Feber A; Guilhamon P; Lechner M; Fenton T; Wilson GA; Thirlwell C; Morris TJ; Flanagan AM; Teschendorff AE; Kelly JD; Beck S
Genome Biol; 2014 Feb; 15(2):R30. PubMed ID: 24490765
[TBL] [Abstract][Full Text] [Related]
3. Correlation of Infinium HumanMethylation450K and MethylationEPIC BeadChip arrays in cartilage.
Cheung K; Burgers MJ; Young DA; Cockell S; Reynard LN
Epigenetics; 2020; 15(6-7):594-603. PubMed ID: 31833794
[TBL] [Abstract][Full Text] [Related]
4. SWAN: Subset-quantile within array normalization for illumina infinium HumanMethylation450 BeadChips.
Maksimovic J; Gordon L; Oshlack A
Genome Biol; 2012 Jun; 13(6):R44. PubMed ID: 22703947
[TBL] [Abstract][Full Text] [Related]
5. Preprocessing, normalization and integration of the Illumina HumanMethylationEPIC array with minfi.
Fortin JP; Triche TJ; Hansen KD
Bioinformatics; 2017 Feb; 33(4):558-560. PubMed ID: 28035024
[TBL] [Abstract][Full Text] [Related]
6. Impact of SNPs on methylation readouts by Illumina Infinium HumanMethylation450 BeadChip Array: implications for comparative population studies.
Daca-Roszak P; Pfeifer A; Żebracka-Gala J; Rusinek D; Szybińska A; Jarząb B; Witt M; Ziętkiewicz E
BMC Genomics; 2015 Nov; 16():1003. PubMed ID: 26607064
[TBL] [Abstract][Full Text] [Related]
7. An accessible, interactive GenePattern Notebook for analysis and exploration of single-cell transcriptomic data.
Mah CK; Wenzel AT; Juarez EF; Tabor T; Reich MM; Mesirov JP
F1000Res; 2018; 7():1306. PubMed ID: 31316748
[TBL] [Abstract][Full Text] [Related]
8. Normalization of Illumina Infinium whole-genome SNP data improves copy number estimates and allelic intensity ratios.
Staaf J; Vallon-Christersson J; Lindgren D; Juliusson G; Rosenquist R; Höglund M; Borg A; Ringnér M
BMC Bioinformatics; 2008 Oct; 9():409. PubMed ID: 18831757
[TBL] [Abstract][Full Text] [Related]
9. Complete pipeline for Infinium(®) Human Methylation 450K BeadChip data processing using subset quantile normalization for accurate DNA methylation estimation.
Touleimat N; Tost J
Epigenomics; 2012 Jun; 4(3):325-41. PubMed ID: 22690668
[TBL] [Abstract][Full Text] [Related]
10. IMA: an R package for high-throughput analysis of Illumina's 450K Infinium methylation data.
Wang D; Yan L; Hu Q; Sucheston LE; Higgins MJ; Ambrosone CB; Johnson CS; Smiraglia DJ; Liu S
Bioinformatics; 2012 Mar; 28(5):729-30. PubMed ID: 22253290
[TBL] [Abstract][Full Text] [Related]
11. MethLAB: a graphical user interface package for the analysis of array-based DNA methylation data.
Kilaru V; Barfield RT; Schroeder JW; Smith AK; Conneely KN
Epigenetics; 2012 Mar; 7(3):225-9. PubMed ID: 22430798
[TBL] [Abstract][Full Text] [Related]
12. Conumee 2.0: enhanced copy-number variation analysis from DNA methylation arrays for humans and mice.
Daenekas B; Pérez E; Boniolo F; Stefan S; Benfatto S; Sill M; Sturm D; Jones DTW; Capper D; Zapatka M; Hovestadt V
Bioinformatics; 2024 Feb; 40(2):. PubMed ID: 38244574
[TBL] [Abstract][Full Text] [Related]
13. CopyNumber450kCancer: baseline correction for accurate copy number calling from the 450k methylation array.
Marzouka NA; Nordlund J; Bäcklin CL; Lönnerholm G; Syvänen AC; Carlsson Almlöf J
Bioinformatics; 2016 Apr; 32(7):1080-2. PubMed ID: 26553913
[TBL] [Abstract][Full Text] [Related]
14. MADA: a web service for analysing DNA methylation array data.
Hu X; Tang L; Wang L; Wu FX; Li M
BMC Bioinformatics; 2020 Nov; 21(Suppl 6):403. PubMed ID: 33203349
[TBL] [Abstract][Full Text] [Related]
15. Marmal-aid--a database for Infinium HumanMethylation450.
Lowe R; Rakyan VK
BMC Bioinformatics; 2013 Dec; 14():359. PubMed ID: 24330312
[TBL] [Abstract][Full Text] [Related]
16. A data-driven approach to preprocessing Illumina 450K methylation array data.
Pidsley R; Y Wong CC; Volta M; Lunnon K; Mill J; Schalkwyk LC
BMC Genomics; 2013 May; 14():293. PubMed ID: 23631413
[TBL] [Abstract][Full Text] [Related]
17. ChAMP: 450k Chip Analysis Methylation Pipeline.
Morris TJ; Butcher LM; Feber A; Teschendorff AE; Chakravarthy AR; Wojdacz TK; Beck S
Bioinformatics; 2014 Feb; 30(3):428-30. PubMed ID: 24336642
[TBL] [Abstract][Full Text] [Related]
18. MethCNA: a database for integrating genomic and epigenomic data in human cancer.
Deng G; Yang J; Zhang Q; Xiao ZX; Cai H
BMC Genomics; 2018 Feb; 19(1):138. PubMed ID: 29433427
[TBL] [Abstract][Full Text] [Related]
19. RELIC: a novel dye-bias correction method for Illumina Methylation BeadChip.
Xu Z; Langie SA; De Boever P; Taylor JA; Niu L
BMC Genomics; 2017 Jan; 18(1):4. PubMed ID: 28049437
[TBL] [Abstract][Full Text] [Related]
20. A framework for analyzing DNA methylation data from Illumina Infinium HumanMethylation450 BeadChip.
Wang Z; Wu X; Wang Y
BMC Bioinformatics; 2018 Apr; 19(Suppl 5):115. PubMed ID: 29671397
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]