BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

204 related articles for article (PubMed ID: 31114890)

  • 1. Protein Interaction Z Score Assessment (PIZSA): an empirical scoring scheme for evaluation of protein-protein interactions.
    Roy AA; Dhawanjewar AS; Sharma P; Singh G; Madhusudhan MS
    Nucleic Acids Res; 2019 Jul; 47(W1):W331-W337. PubMed ID: 31114890
    [TBL] [Abstract][Full Text] [Related]  

  • 2. HawkDock: a web server to predict and analyze the protein-protein complex based on computational docking and MM/GBSA.
    Weng G; Wang E; Wang Z; Liu H; Zhu F; Li D; Hou T
    Nucleic Acids Res; 2019 Jul; 47(W1):W322-W330. PubMed ID: 31106357
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A knowledge-based scoring function to assess quaternary associations of proteins.
    Dhawanjewar AS; Roy AA; Madhusudhan MS
    Bioinformatics; 2020 Jun; 36(12):3739-3748. PubMed ID: 32246820
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Performance of human and server prediction in CAPRI rounds 38-45.
    Duan R; Qiu L; Xu X; Ma Z; Merideth BR; Shyu CR; Zou X
    Proteins; 2020 Aug; 88(8):1110-1120. PubMed ID: 32483825
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Challenges and opportunities of automated protein-protein docking: HDOCK server vs human predictions in CAPRI Rounds 38-46.
    Yan Y; He J; Feng Y; Lin P; Tao H; Huang SY
    Proteins; 2020 Aug; 88(8):1055-1069. PubMed ID: 31994779
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Energy-based graph convolutional networks for scoring protein docking models.
    Cao Y; Shen Y
    Proteins; 2020 Aug; 88(8):1091-1099. PubMed ID: 32144844
    [TBL] [Abstract][Full Text] [Related]  

  • 7. ClusPro in rounds 38 to 45 of CAPRI: Toward combining template-based methods with free docking.
    Padhorny D; Porter KA; Ignatov M; Alekseenko A; Beglov D; Kotelnikov S; Ashizawa R; Desta I; Alam N; Sun Z; Brini E; Dill K; Schueler-Furman O; Vajda S; Kozakov D
    Proteins; 2020 Aug; 88(8):1082-1090. PubMed ID: 32142178
    [TBL] [Abstract][Full Text] [Related]  

  • 8. InterEvDock2: an expanded server for protein docking using evolutionary and biological information from homology models and multimeric inputs.
    Quignot C; Rey J; Yu J; Tufféry P; Guerois R; Andreani J
    Nucleic Acids Res; 2018 Jul; 46(W1):W408-W416. PubMed ID: 29741647
    [TBL] [Abstract][Full Text] [Related]  

  • 9. CLUB-MARTINI: Selecting Favourable Interactions amongst Available Candidates, a Coarse-Grained Simulation Approach to Scoring Docking Decoys.
    Hou Q; Lensink MF; Heringa J; Feenstra KA
    PLoS One; 2016; 11(5):e0155251. PubMed ID: 27166787
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Performance and enhancement of the LZerD protein assembly pipeline in CAPRI 38-46.
    Christoffer C; Terashi G; Shin WH; Aderinwale T; Maddhuri Venkata Subramaniya SR; Peterson L; Verburgt J; Kihara D
    Proteins; 2020 Aug; 88(8):948-961. PubMed ID: 31697428
    [TBL] [Abstract][Full Text] [Related]  

  • 11. pyDock scoring for the new modeling challenges in docking: Protein-peptide, homo-multimers, and domain-domain interactions.
    Pallara C; Jiménez-García B; Romero M; Moal IH; Fernández-Recio J
    Proteins; 2017 Mar; 85(3):487-496. PubMed ID: 27701776
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Using restraints in EROS-DOCK improves model quality in pairwise and multicomponent protein docking.
    Ruiz Echartea ME; Ritchie DW; Chauvot de Beauchêne I
    Proteins; 2020 Aug; 88(8):1121-1128. PubMed ID: 32506478
    [TBL] [Abstract][Full Text] [Related]  

  • 13. New additions to the ClusPro server motivated by CAPRI.
    Vajda S; Yueh C; Beglov D; Bohnuud T; Mottarella SE; Xia B; Hall DR; Kozakov D
    Proteins; 2017 Mar; 85(3):435-444. PubMed ID: 27936493
    [TBL] [Abstract][Full Text] [Related]  

  • 14. An overview of data-driven HADDOCK strategies in CAPRI rounds 38-45.
    Koukos PI; Roel-Touris J; Ambrosetti F; Geng C; Schaarschmidt J; Trellet ME; Melquiond ASJ; Xue LC; Honorato RV; Moreira I; Kurkcuoglu Z; Vangone A; Bonvin AMJJ
    Proteins; 2020 Aug; 88(8):1029-1036. PubMed ID: 31886559
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Coarse-grained and atomic resolution biomolecular docking with the ATTRACT approach.
    Glashagen G; de Vries S; Uciechowska-Kaczmarzyk U; Samsonov SA; Murail S; Tuffery P; Zacharias M
    Proteins; 2020 Aug; 88(8):1018-1028. PubMed ID: 31785163
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Performance of ZDOCK and IRAD in CAPRI rounds 39-45.
    Vreven T; Vangaveti S; Borrman TM; Gaines JC; Weng Z
    Proteins; 2020 Aug; 88(8):1050-1054. PubMed ID: 31994784
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Modeling beta-sheet peptide-protein interactions: Rosetta FlexPepDock in CAPRI rounds 38-45.
    Khramushin A; Marcu O; Alam N; Shimony O; Padhorny D; Brini E; Dill KA; Vajda S; Kozakov D; Schueler-Furman O
    Proteins; 2020 Aug; 88(8):1037-1049. PubMed ID: 31891416
    [TBL] [Abstract][Full Text] [Related]  

  • 18. How to choose templates for modeling of protein complexes: Insights from benchmarking template-based docking.
    Chakravarty D; McElfresh GW; Kundrotas PJ; Vakser IA
    Proteins; 2020 Aug; 88(8):1070-1081. PubMed ID: 31994759
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Human and server docking prediction for CAPRI round 30-35 using LZerD with combined scoring functions.
    Peterson LX; Kim H; Esquivel-Rodriguez J; Roy A; Han X; Shin WH; Zhang J; Terashi G; Lee M; Kihara D
    Proteins; 2017 Mar; 85(3):513-527. PubMed ID: 27654025
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Identification and visualization of protein binding regions with the ArDock server.
    Reille S; Garnier M; Robert X; Gouet P; Martin J; Launay G
    Nucleic Acids Res; 2018 Jul; 46(W1):W417-W422. PubMed ID: 29905873
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.