203 related articles for article (PubMed ID: 31114890)
21. Template-based modeling and ab-initio docking using CoDock in CAPRI.
Kong R; Liu RR; Xu XM; Zhang DW; Xu XS; Shi H; Chang S
Proteins; 2020 Aug; 88(8):1100-1109. PubMed ID: 32181952
[TBL] [Abstract][Full Text] [Related]
22. Addressing recent docking challenges: A hybrid strategy to integrate template-based and free protein-protein docking.
Yan Y; Wen Z; Wang X; Huang SY
Proteins; 2017 Mar; 85(3):497-512. PubMed ID: 28026062
[TBL] [Abstract][Full Text] [Related]
23. Performance of MDockPP in CAPRI rounds 28-29 and 31-35 including the prediction of water-mediated interactions.
Xu X; Qiu L; Yan C; Ma Z; Grinter SZ; Zou X
Proteins; 2017 Mar; 85(3):424-434. PubMed ID: 27802576
[TBL] [Abstract][Full Text] [Related]
24. Template-based modeling of diverse protein interactions in CAPRI rounds 38-45.
Dapkūnas J; Kairys V; Olechnovič K; Venclovas Č
Proteins; 2020 Aug; 88(8):939-947. PubMed ID: 31697420
[TBL] [Abstract][Full Text] [Related]
25. Structure prediction of biological assemblies using GALAXY in CAPRI rounds 38-45.
Park T; Woo H; Baek M; Yang J; Seok C
Proteins; 2020 Aug; 88(8):1009-1017. PubMed ID: 31774573
[TBL] [Abstract][Full Text] [Related]
26. Novel sampling strategies and a coarse-grained score function for docking homomers, flexible heteromers, and oligosaccharides using Rosetta in CAPRI rounds 37-45.
Roy Burman SS; Nance ML; Jeliazkov JR; Labonte JW; Lubin JH; Biswas N; Gray JJ
Proteins; 2020 Aug; 88(8):973-985. PubMed ID: 31742764
[TBL] [Abstract][Full Text] [Related]
27. Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.
Lensink MF; Velankar S; Kryshtafovych A; Huang SY; Schneidman-Duhovny D; Sali A; Segura J; Fernandez-Fuentes N; Viswanath S; Elber R; Grudinin S; Popov P; Neveu E; Lee H; Baek M; Park S; Heo L; Rie Lee G; Seok C; Qin S; Zhou HX; Ritchie DW; Maigret B; Devignes MD; Ghoorah A; Torchala M; Chaleil RA; Bates PA; Ben-Zeev E; Eisenstein M; Negi SS; Weng Z; Vreven T; Pierce BG; Borrman TM; Yu J; Ochsenbein F; Guerois R; Vangone A; Rodrigues JP; van Zundert G; Nellen M; Xue L; Karaca E; Melquiond AS; Visscher K; Kastritis PL; Bonvin AM; Xu X; Qiu L; Yan C; Li J; Ma Z; Cheng J; Zou X; Shen Y; Peterson LX; Kim HR; Roy A; Han X; Esquivel-Rodriguez J; Kihara D; Yu X; Bruce NJ; Fuller JC; Wade RC; Anishchenko I; Kundrotas PJ; Vakser IA; Imai K; Yamada K; Oda T; Nakamura T; Tomii K; Pallara C; Romero-Durana M; Jiménez-García B; Moal IH; Férnandez-Recio J; Joung JY; Kim JY; Joo K; Lee J; Kozakov D; Vajda S; Mottarella S; Hall DR; Beglov D; Mamonov A; Xia B; Bohnuud T; Del Carpio CA; Ichiishi E; Marze N; Kuroda D; Roy Burman SS; Gray JJ; Chermak E; Cavallo L; Oliva R; Tovchigrechko A; Wodak SJ
Proteins; 2016 Sep; 84 Suppl 1(Suppl Suppl 1):323-48. PubMed ID: 27122118
[TBL] [Abstract][Full Text] [Related]
28. FlexPepDock lessons from CAPRI peptide-protein rounds and suggested new criteria for assessment of model quality and utility.
Marcu O; Dodson EJ; Alam N; Sperber M; Kozakov D; Lensink MF; Schueler-Furman O
Proteins; 2017 Mar; 85(3):445-462. PubMed ID: 28002624
[TBL] [Abstract][Full Text] [Related]
29. Sense and simplicity in HADDOCK scoring: Lessons from CASP-CAPRI round 1.
Vangone A; Rodrigues JP; Xue LC; van Zundert GC; Geng C; Kurkcuoglu Z; Nellen M; Narasimhan S; Karaca E; van Dijk M; Melquiond AS; Visscher KM; Trellet M; Kastritis PL; Bonvin AM
Proteins; 2017 Mar; 85(3):417-423. PubMed ID: 27802573
[TBL] [Abstract][Full Text] [Related]
30. Performance of ZDOCK and IRAD in CAPRI rounds 28-34.
Vreven T; Pierce BG; Borrman TM; Weng Z
Proteins; 2017 Mar; 85(3):408-416. PubMed ID: 27718275
[TBL] [Abstract][Full Text] [Related]
31. Integrative modeling of protein-protein interactions with pyDock for the new docking challenges.
Rosell M; Rodríguez-Lumbreras LA; Romero-Durana M; Jiménez-García B; Díaz L; Fernández-Recio J
Proteins; 2020 Aug; 88(8):999-1008. PubMed ID: 31746039
[TBL] [Abstract][Full Text] [Related]
32. Docking proteins and peptides under evolutionary constraints in Critical Assessment of PRediction of Interactions rounds 38 to 45.
Nadaradjane AA; Quignot C; Traoré S; Andreani J; Guerois R
Proteins; 2020 Aug; 88(8):986-998. PubMed ID: 31746034
[TBL] [Abstract][Full Text] [Related]
33. HSYMDOCK: a docking web server for predicting the structure of protein homo-oligomers with Cn or Dn symmetry.
Yan Y; Tao H; Huang SY
Nucleic Acids Res; 2018 Jul; 46(W1):W423-W431. PubMed ID: 29846641
[TBL] [Abstract][Full Text] [Related]
34. HPEPDOCK: a web server for blind peptide-protein docking based on a hierarchical algorithm.
Zhou P; Jin B; Li H; Huang SY
Nucleic Acids Res; 2018 Jul; 46(W1):W443-W450. PubMed ID: 29746661
[TBL] [Abstract][Full Text] [Related]
35. Modeling and minimizing CAPRI round 30 symmetrical protein complexes from CASP-11 structural models.
El Houasli M; Maigret B; Devignes MD; Ghoorah AW; Grudinin S; Ritchie DW
Proteins; 2017 Mar; 85(3):463-469. PubMed ID: 27701764
[TBL] [Abstract][Full Text] [Related]
36. Modeling protein-protein, protein-peptide, and protein-oligosaccharide complexes: CAPRI 7th edition.
Lensink MF; Nadzirin N; Velankar S; Wodak SJ
Proteins; 2020 Aug; 88(8):916-938. PubMed ID: 31886916
[TBL] [Abstract][Full Text] [Related]
37. IntFOLD: an integrated web resource for high performance protein structure and function prediction.
McGuffin LJ; Adiyaman R; Maghrabi AHA; Shuid AN; Brackenridge DA; Nealon JO; Philomina LS
Nucleic Acids Res; 2019 Jul; 47(W1):W408-W413. PubMed ID: 31045208
[TBL] [Abstract][Full Text] [Related]
38. Ranking multiple docking solutions based on the conservation of inter-residue contacts.
Oliva R; Vangone A; Cavallo L
Proteins; 2013 Sep; 81(9):1571-84. PubMed ID: 23609916
[TBL] [Abstract][Full Text] [Related]
39. mCSM-PPI2: predicting the effects of mutations on protein-protein interactions.
Rodrigues CHM; Myung Y; Pires DEV; Ascher DB
Nucleic Acids Res; 2019 Jul; 47(W1):W338-W344. PubMed ID: 31114883
[TBL] [Abstract][Full Text] [Related]
40. PrankWeb: a web server for ligand binding site prediction and visualization.
Jendele L; Krivak R; Skoda P; Novotny M; Hoksza D
Nucleic Acids Res; 2019 Jul; 47(W1):W345-W349. PubMed ID: 31114880
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]