These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
3. HiC-Hiker: a probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C. Nakabayashi R; Morishita S Bioinformatics; 2020 Jul; 36(13):3966-3974. PubMed ID: 32369554 [TBL] [Abstract][Full Text] [Related]
4. hicGAN infers super resolution Hi-C data with generative adversarial networks. Liu Q; Lv H; Jiang R Bioinformatics; 2019 Jul; 35(14):i99-i107. PubMed ID: 31510693 [TBL] [Abstract][Full Text] [Related]
5. HiC-TE: a computational pipeline for Hi-C data analysis to study the role of repeat family interactions in the genome 3D organization. Lexa M; Cechova M; Nguyen SH; Jedlicka P; Tokan V; Kubat Z; Hobza R; Kejnovsky E Bioinformatics; 2022 Aug; 38(16):4030-4032. PubMed ID: 35781332 [TBL] [Abstract][Full Text] [Related]
12. ClusterTAD: an unsupervised machine learning approach to detecting topologically associated domains of chromosomes from Hi-C data. Oluwadare O; Cheng J BMC Bioinformatics; 2017 Nov; 18(1):480. PubMed ID: 29137603 [TBL] [Abstract][Full Text] [Related]
13. Delta: a new web-based 3D genome visualization and analysis platform. Tang B; Li F; Li J; Zhao W; Zhang Z Bioinformatics; 2018 Apr; 34(8):1409-1410. PubMed ID: 29253110 [TBL] [Abstract][Full Text] [Related]
14. HiCRep.py: fast comparison of Hi-C contact matrices in Python. Lin D; Sanders J; Noble WS Bioinformatics; 2021 Sep; 37(18):2996-2997. PubMed ID: 33576390 [TBL] [Abstract][Full Text] [Related]
15. Pairs and Pairix: a file format and a tool for efficient storage and retrieval for Hi-C read pairs. Lee S; Bakker CR; Vitzthum C; Alver BH; Park PJ Bioinformatics; 2022 Mar; 38(6):1729-1731. PubMed ID: 34978573 [TBL] [Abstract][Full Text] [Related]
16. C3D: a tool to predict 3D genomic interactions between cis-regulatory elements. Mehdi T; Bailey SD; Guilhamon P; Lupien M Bioinformatics; 2019 Mar; 35(5):877-879. PubMed ID: 30816925 [TBL] [Abstract][Full Text] [Related]
17. PyRanges: efficient comparison of genomic intervals in Python. Stovner EB; Sætrom P Bioinformatics; 2020 Feb; 36(3):918-919. PubMed ID: 31373614 [TBL] [Abstract][Full Text] [Related]
18. capC-MAP: software for analysis of Capture-C data. Buckle A; Gilbert N; Marenduzzo D; Brackley CA Bioinformatics; 2019 Nov; 35(22):4773-4775. PubMed ID: 31173058 [TBL] [Abstract][Full Text] [Related]
19. Identification of copy number variations and translocations in cancer cells from Hi-C data. Chakraborty A; Ay F Bioinformatics; 2018 Jan; 34(2):338-345. PubMed ID: 29048467 [TBL] [Abstract][Full Text] [Related]
20. HiC-spector: a matrix library for spectral and reproducibility analysis of Hi-C contact maps. Yan KK; Yardimci GG; Yan C; Noble WS; Gerstein M Bioinformatics; 2017 Jul; 33(14):2199-2201. PubMed ID: 28369339 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]