266 related articles for article (PubMed ID: 31118500)
1. Multiplexed detection of RNA using MERFISH and branched DNA amplification.
Xia C; Babcock HP; Moffitt JR; Zhuang X
Sci Rep; 2019 May; 9(1):7721. PubMed ID: 31118500
[TBL] [Abstract][Full Text] [Related]
2. High-throughput single-cell gene-expression profiling with multiplexed error-robust fluorescence in situ hybridization.
Moffitt JR; Hao J; Wang G; Chen KH; Babcock HP; Zhuang X
Proc Natl Acad Sci U S A; 2016 Sep; 113(39):11046-51. PubMed ID: 27625426
[TBL] [Abstract][Full Text] [Related]
3. High-performance multiplexed fluorescence in situ hybridization in culture and tissue with matrix imprinting and clearing.
Moffitt JR; Hao J; Bambah-Mukku D; Lu T; Dulac C; Zhuang X
Proc Natl Acad Sci U S A; 2016 Dec; 113(50):14456-14461. PubMed ID: 27911841
[TBL] [Abstract][Full Text] [Related]
4. Spatial transcriptome profiling by MERFISH reveals subcellular RNA compartmentalization and cell cycle-dependent gene expression.
Xia C; Fan J; Emanuel G; Hao J; Zhuang X
Proc Natl Acad Sci U S A; 2019 Sep; 116(39):19490-19499. PubMed ID: 31501331
[TBL] [Abstract][Full Text] [Related]
5. Multiplexed imaging of high-density libraries of RNAs with MERFISH and expansion microscopy.
Wang G; Moffitt JR; Zhuang X
Sci Rep; 2018 Mar; 8(1):4847. PubMed ID: 29555914
[TBL] [Abstract][Full Text] [Related]
6. RNA Imaging with Multiplexed Error-Robust Fluorescence In Situ Hybridization (MERFISH).
Moffitt JR; Zhuang X
Methods Enzymol; 2016; 572():1-49. PubMed ID: 27241748
[TBL] [Abstract][Full Text] [Related]
7. RNA imaging. Spatially resolved, highly multiplexed RNA profiling in single cells.
Chen KH; Boettiger AN; Moffitt JR; Wang S; Zhuang X
Science; 2015 Apr; 348(6233):aaa6090. PubMed ID: 25858977
[TBL] [Abstract][Full Text] [Related]
8. Concordance of MERFISH spatial transcriptomics with bulk and single-cell RNA sequencing.
Liu J; Tran V; Vemuri VNP; Byrne A; Borja M; Kim YJ; Agarwal S; Wang R; Awayan K; Murti A; Taychameekiatchai A; Wang B; Emanuel G; He J; Haliburton J; Oliveira Pisco A; Neff NF
Life Sci Alliance; 2023 Jan; 6(1):. PubMed ID: 36526371
[TBL] [Abstract][Full Text] [Related]
9. MERFISHing for spatial context.
Shalek AK; Satija R
Trends Immunol; 2015 Jul; 36(7):390-1. PubMed ID: 26013647
[TBL] [Abstract][Full Text] [Related]
10. Genome-Scale Imaging of the 3D Organization and Transcriptional Activity of Chromatin.
Su JH; Zheng P; Kinrot SS; Bintu B; Zhuang X
Cell; 2020 Sep; 182(6):1641-1659.e26. PubMed ID: 32822575
[TBL] [Abstract][Full Text] [Related]
11. Omics goes spatial epigenomics.
Schueder F; Bewersdorf J
Cell; 2022 Nov; 185(23):4253-4255. PubMed ID: 36368304
[TBL] [Abstract][Full Text] [Related]
12. Accurate single-molecule spot detection for image-based spatial transcriptomics with weakly supervised deep learning.
Laubscher E; Wang X; Razin N; Dougherty T; Xu RJ; Ombelets L; Pao E; Graf W; Moffitt JR; Yue Y; Van Valen D
Cell Syst; 2024 May; 15(5):475-482.e6. PubMed ID: 38754367
[TBL] [Abstract][Full Text] [Related]
13. Imaging-based pooled CRISPR screening reveals regulators of lncRNA localization.
Wang C; Lu T; Emanuel G; Babcock HP; Zhuang X
Proc Natl Acad Sci U S A; 2019 May; 116(22):10842-10851. PubMed ID: 31085639
[TBL] [Abstract][Full Text] [Related]
14. A Bayesian model for single cell transcript expression analysis on MERFISH data.
Köster J; Brown M; Liu XS
Bioinformatics; 2019 Mar; 35(6):995-1001. PubMed ID: 30875429
[TBL] [Abstract][Full Text] [Related]
15. Characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomic data with nonuniform cellular densities.
Miller BF; Bambah-Mukku D; Dulac C; Zhuang X; Fan J
Genome Res; 2021 Oct; 31(10):1843-1855. PubMed ID: 34035045
[TBL] [Abstract][Full Text] [Related]
16. Cell segmentation in imaging-based spatial transcriptomics.
Petukhov V; Xu RJ; Soldatov RA; Cadinu P; Khodosevich K; Moffitt JR; Kharchenko PV
Nat Biotechnol; 2022 Mar; 40(3):345-354. PubMed ID: 34650268
[TBL] [Abstract][Full Text] [Related]
17. Barcoded oligonucleotides ligated on RNA amplified for multiplexed and parallel in situ analyses.
Liu S; Punthambaker S; Iyer EPR; Ferrante T; Goodwin D; Fürth D; Pawlowski AC; Jindal K; Tam JM; Mifflin L; Alon S; Sinha A; Wassie AT; Chen F; Cheng A; Willocq V; Meyer K; Ling KH; Camplisson CK; Kohman RE; Aach J; Lee JH; Yankner BA; Boyden ES; Church GM
Nucleic Acids Res; 2021 Jun; 49(10):e58. PubMed ID: 33693773
[TBL] [Abstract][Full Text] [Related]
18. ProbeDealer is a convenient tool for designing probes for highly multiplexed fluorescence in situ hybridization.
Hu M; Yang B; Cheng Y; Radda JSD; Chen Y; Liu M; Wang S
Sci Rep; 2020 Dec; 10(1):22031. PubMed ID: 33328483
[TBL] [Abstract][Full Text] [Related]
19. Automation of Multiplexed RNAscope Single-Molecule Fluorescent In Situ Hybridization and Immunohistochemistry for Spatial Tissue Mapping.
Roberts K; Bayraktar OA
Methods Mol Biol; 2020; 2148():229-244. PubMed ID: 32394386
[TBL] [Abstract][Full Text] [Related]
20. Stellaris® RNA Fluorescence In Situ Hybridization for the Simultaneous Detection of Immature and Mature Long Noncoding RNAs in Adherent Cells.
Orjalo AV; Johansson HE
Methods Mol Biol; 2016; 1402():119-134. PubMed ID: 26721487
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
