BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

249 related articles for article (PubMed ID: 31125569)

  • 1. Updates to Binding MOAD (Mother of All Databases): Polypharmacology Tools and Their Utility in Drug Repurposing.
    Smith RD; Clark JJ; Ahmed A; Orban ZJ; Dunbar JB; Carlson HA
    J Mol Biol; 2019 Jun; 431(13):2423-2433. PubMed ID: 31125569
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Sunsetting Binding MOAD with its last data update and the addition of 3D-ligand polypharmacology tools.
    Wagle S; Smith RD; Dominic AJ; DasGupta D; Tripathi SK; Carlson HA
    Sci Rep; 2023 Feb; 13(1):3008. PubMed ID: 36810894
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Exploring protein-ligand recognition with Binding MOAD.
    Smith RD; Hu L; Falkner JA; Benson ML; Nerothin JP; Carlson HA
    J Mol Graph Model; 2006 May; 24(6):414-25. PubMed ID: 16168689
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Recent improvements to Binding MOAD: a resource for protein-ligand binding affinities and structures.
    Ahmed A; Smith RD; Clark JJ; Dunbar JB; Carlson HA
    Nucleic Acids Res; 2015 Jan; 43(Database issue):D465-9. PubMed ID: 25378330
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Binding MOAD, a high-quality protein-ligand database.
    Benson ML; Smith RD; Khazanov NA; Dimcheff B; Beaver J; Dresslar P; Nerothin J; Carlson HA
    Nucleic Acids Res; 2008 Jan; 36(Database issue):D674-8. PubMed ID: 18055497
    [TBL] [Abstract][Full Text] [Related]  

  • 6. MTLD, a Database of Multiple Target Ligands, the Updated Version.
    Chen C; Wu M; Cen S; Wu J; Zhou J
    Molecules; 2017 Sep; 22(9):. PubMed ID: 28878188
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Binding MOAD (Mother Of All Databases).
    Hu L; Benson ML; Smith RD; Lerner MG; Carlson HA
    Proteins; 2005 Aug; 60(3):333-40. PubMed ID: 15971202
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Polypharmacology rescored: protein-ligand interaction profiles for remote binding site similarity assessment.
    Salentin S; Haupt VJ; Daminelli S; Schroeder M
    Prog Biophys Mol Biol; 2014; 116(2-3):174-86. PubMed ID: 24923864
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Identification of Target Associations for Polypharmacology from Analysis of Crystallographic Ligands of the Protein Data Bank.
    Pinzi L; Rastelli G
    J Chem Inf Model; 2020 Jan; 60(1):372-390. PubMed ID: 31800237
    [TBL] [Abstract][Full Text] [Related]  

  • 10. High Impact: The Role of Promiscuous Binding Sites in Polypharmacology.
    Cerisier N; Petitjean M; Regad L; Bayard Q; Réau M; Badel A; Camproux AC
    Molecules; 2019 Jul; 24(14):. PubMed ID: 31295958
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Local Alignment of Ligand Binding Sites in Proteins for Polypharmacology and Drug Repositioning.
    Brylinski M
    Methods Mol Biol; 2017; 1611():109-122. PubMed ID: 28451975
    [TBL] [Abstract][Full Text] [Related]  

  • 12. GES polypharmacology fingerprints: a novel approach for drug repositioning.
    Pérez-Nueno VI; Karaboga AS; Souchet M; Ritchie DW
    J Chem Inf Model; 2014 Mar; 54(3):720-34. PubMed ID: 24494653
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Exploring the composition of protein-ligand binding sites on a large scale.
    Khazanov NA; Carlson HA
    PLoS Comput Biol; 2013; 9(11):e1003321. PubMed ID: 24277997
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Drug ReposER: a web server for predicting similar amino acid arrangements to known drug binding interfaces for potential drug repositioning.
    Ab Ghani NS; Ramlan EI; Firdaus-Raih M
    Nucleic Acids Res; 2019 Jul; 47(W1):W350-W356. PubMed ID: 31106379
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Drug Promiscuity in PDB: Protein Binding Site Similarity Is Key.
    Haupt VJ; Daminelli S; Schroeder M
    PLoS One; 2013; 8(6):e65894. PubMed ID: 23805191
    [TBL] [Abstract][Full Text] [Related]  

  • 16. ePharmaLib: A Versatile Library of e-Pharmacophores to Address Small-Molecule (Poly-)Pharmacology.
    Moumbock AFA; Li J; Tran HTT; Hinkelmann R; Lamy E; Jessen HJ; Günther S
    J Chem Inf Model; 2021 Jul; 61(7):3659-3666. PubMed ID: 34236848
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Protein-ligand-based pharmacophores: generation and utility assessment in computational ligand profiling.
    Meslamani J; Li J; Sutter J; Stevens A; Bertrand HO; Rognan D
    J Chem Inf Model; 2012 Apr; 52(4):943-55. PubMed ID: 22480372
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Domain-based small molecule binding site annotation.
    Snyder KA; Feldman HJ; Dumontier M; Salama JJ; Hogue CW
    BMC Bioinformatics; 2006 Mar; 7():152. PubMed ID: 16545112
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Assessing protein kinase target similarity: Comparing sequence, structure, and cheminformatics approaches.
    Gani OA; Thakkar B; Narayanan D; Alam KA; Kyomuhendo P; Rothweiler U; Tello-Franco V; Engh RA
    Biochim Biophys Acta; 2015 Oct; 1854(10 Pt B):1605-16. PubMed ID: 26001898
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Identify drug repurposing candidates by mining the protein data bank.
    Moriaud F; Richard SB; Adcock SA; Chanas-Martin L; Surgand JS; Ben Jelloul M; Delfaud F
    Brief Bioinform; 2011 Jul; 12(4):336-40. PubMed ID: 21768131
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 13.