166 related articles for article (PubMed ID: 31129958)
1. DecoyDeveloper: An On-Demand, De Novo Decoy Glycopeptide Generator.
Shipman JT; Su X; Hua D; Desaire H
J Proteome Res; 2019 Jul; 18(7):2896-2902. PubMed ID: 31129958
[TBL] [Abstract][Full Text] [Related]
2. Two New Tools for Glycopeptide Analysis Researchers: A Glycopeptide Decoy Generator and a Large Data Set of Assigned CID Spectra of Glycopeptides.
Lakbub JC; Su X; Zhu Z; Patabandige MW; Hua D; Go EP; Desaire H
J Proteome Res; 2017 Aug; 16(8):3002-3008. PubMed ID: 28691494
[TBL] [Abstract][Full Text] [Related]
3. New glycoproteomics software, GlycoPep Evaluator, generates decoy glycopeptides de novo and enables accurate false discovery rate analysis for small data sets.
Zhu Z; Su X; Go EP; Desaire H
Anal Chem; 2014 Sep; 86(18):9212-9. PubMed ID: 25137014
[TBL] [Abstract][Full Text] [Related]
4. GlycoMaster DB: software to assist the automated identification of N-linked glycopeptides by tandem mass spectrometry.
He L; Xin L; Shan B; Lajoie GA; Ma B
J Proteome Res; 2014 Sep; 13(9):3881-95. PubMed ID: 25113421
[TBL] [Abstract][Full Text] [Related]
5. GlycoPep Detector: a tool for assigning mass spectrometry data of N-linked glycopeptides on the basis of their electron transfer dissociation spectra.
Zhu Z; Hua D; Clark DF; Go EP; Desaire H
Anal Chem; 2013 May; 85(10):5023-32. PubMed ID: 23510108
[TBL] [Abstract][Full Text] [Related]
6. Toward Automated N-Glycopeptide Identification in Glycoproteomics.
Lee LY; Moh ES; Parker BL; Bern M; Packer NH; Thaysen-Andersen M
J Proteome Res; 2016 Oct; 15(10):3904-3915. PubMed ID: 27519006
[TBL] [Abstract][Full Text] [Related]
7. The Art of Destruction: Optimizing Collision Energies in Quadrupole-Time of Flight (Q-TOF) Instruments for Glycopeptide-Based Glycoproteomics.
Hinneburg H; Stavenhagen K; Schweiger-Hufnagel U; Pengelley S; Jabs W; Seeberger PH; Silva DV; Wuhrer M; Kolarich D
J Am Soc Mass Spectrom; 2016 Mar; 27(3):507-19. PubMed ID: 26729457
[TBL] [Abstract][Full Text] [Related]
8. Automated glycopeptide analysis--review of current state and future directions.
Dallas DC; Martin WF; Hua S; German JB
Brief Bioinform; 2013 May; 14(3):361-74. PubMed ID: 22843980
[TBL] [Abstract][Full Text] [Related]
9. gFinder: A Web-Based Bioinformatics Tool for the Analysis of N-Glycopeptides.
Kim JW; Hwang H; Lim JS; Lee HJ; Jeong SK; Yoo JS; Paik YK
J Proteome Res; 2016 Nov; 15(11):4116-4125. PubMed ID: 27573070
[TBL] [Abstract][Full Text] [Related]
10. Identification of Glycopeptides with Multiple Hydroxylysine O-Glycosylation Sites by Tandem Mass Spectrometry.
Zhang Y; Yu CY; Song E; Li SC; Mechref Y; Tang H; Liu X
J Proteome Res; 2015 Dec; 14(12):5099-108. PubMed ID: 26565680
[TBL] [Abstract][Full Text] [Related]
11. A review of methods for interpretation of glycopeptide tandem mass spectral data.
Hu H; Khatri K; Klein J; Leymarie N; Zaia J
Glycoconj J; 2016 Jun; 33(3):285-96. PubMed ID: 26612686
[TBL] [Abstract][Full Text] [Related]
12. Direct glycan structure determination of intact N-linked glycopeptides by low-energy collision-induced dissociation tandem mass spectrometry and predicted spectral library searching.
Pai PJ; Hu Y; Lam H
Anal Chim Acta; 2016 Aug; 934():152-62. PubMed ID: 27506355
[TBL] [Abstract][Full Text] [Related]
13. SweetNET: A Bioinformatics Workflow for Glycopeptide MS/MS Spectral Analysis.
Nasir W; Toledo AG; Noborn F; Nilsson J; Wang M; Bandeira N; Larson G
J Proteome Res; 2016 Aug; 15(8):2826-40. PubMed ID: 27399812
[TBL] [Abstract][Full Text] [Related]
14. N-Linked Glycopeptide Identification Based on Open Mass Spectral Library Search.
An Z; Shu Q; Lv H; Shu L; Wang J; Yang F; Fu Y
Biomed Res Int; 2018; 2018():1564136. PubMed ID: 30186849
[TBL] [Abstract][Full Text] [Related]
15. Sequential fragment ion filtering and endoglycosidase-assisted identification of intact glycopeptides.
Yu Z; Zhao X; Tian F; Zhao Y; Zhang Y; Huang Y; Qian X; Ying W
Anal Bioanal Chem; 2017 May; 409(12):3077-3087. PubMed ID: 28258464
[TBL] [Abstract][Full Text] [Related]
16. MAGIC: an automated N-linked glycoprotein identification tool using a Y1-ion pattern matching algorithm and in silico MSĀ² approach.
Lynn KS; Chen CC; Lih TM; Cheng CW; Su WC; Chang CH; Cheng CY; Hsu WL; Chen YJ; Sung TY
Anal Chem; 2015 Feb; 87(4):2466-73. PubMed ID: 25629585
[TBL] [Abstract][Full Text] [Related]
17. GlycoPep MassList: software to generate massive inclusion lists for glycopeptide analyses.
Hu W; Su X; Zhu Z; Go EP; Desaire H
Anal Bioanal Chem; 2017 Jan; 409(2):561-570. PubMed ID: 27614974
[TBL] [Abstract][Full Text] [Related]
18. Glycan size and attachment site location affect electron transfer dissociation (ETD) fragmentation and automated glycopeptide identification.
Alagesan K; Hinneburg H; Seeberger PH; Silva DV; Kolarich D
Glycoconj J; 2019 Dec; 36(6):487-493. PubMed ID: 31637569
[TBL] [Abstract][Full Text] [Related]
19. O-Pair Search with MetaMorpheus for O-glycopeptide characterization.
Lu L; Riley NM; Shortreed MR; Bertozzi CR; Smith LM
Nat Methods; 2020 Nov; 17(11):1133-1138. PubMed ID: 33106676
[TBL] [Abstract][Full Text] [Related]
20. Multiattribute Glycan Identification and FDR Control for Glycoproteomics.
Polasky DA; Geiszler DJ; Yu F; Nesvizhskii AI
Mol Cell Proteomics; 2022 Mar; 21(3):100205. PubMed ID: 35091091
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]