These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

161 related articles for article (PubMed ID: 31132071)

  • 1. Enhanced Crosslinking Immunoprecipitation (eCLIP) Method for Efficient Identification of Protein-bound RNA in Mouse Testis.
    Xu Q; Wang C; Ling L; Yue Q; Liu M; Zhang S; Fu K; Ye L; Zheng K
    J Vis Exp; 2019 May; (147):. PubMed ID: 31132071
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Robust transcriptome-wide discovery of RNA-binding protein binding sites with enhanced CLIP (eCLIP).
    Van Nostrand EL; Pratt GA; Shishkin AA; Gelboin-Burkhart C; Fang MY; Sundararaman B; Blue SM; Nguyen TB; Surka C; Elkins K; Stanton R; Rigo F; Guttman M; Yeo GW
    Nat Methods; 2016 Jun; 13(6):508-14. PubMed ID: 27018577
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Robust, Cost-Effective Profiling of RNA Binding Protein Targets with Single-end Enhanced Crosslinking and Immunoprecipitation (seCLIP).
    Van Nostrand EL; Nguyen TB; Gelboin-Burkhart C; Wang R; Blue SM; Pratt GA; Louie AL; Yeo GW
    Methods Mol Biol; 2017; 1648():177-200. PubMed ID: 28766298
    [TBL] [Abstract][Full Text] [Related]  

  • 4. PAR-CliP--a method to identify transcriptome-wide the binding sites of RNA binding proteins.
    Hafner M; Landthaler M; Burger L; Khorshid M; Hausser J; Berninger P; Rothballer A; Ascano M; Jungkamp AC; Munschauer M; Ulrich A; Wardle GS; Dewell S; Zavolan M; Tuschl T
    J Vis Exp; 2010 Jul; (41):. PubMed ID: 20644507
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
    Van Nostrand EL; Pratt GA; Yee BA; Wheeler EC; Blue SM; Mueller J; Park SS; Garcia KE; Gelboin-Burkhart C; Nguyen TB; Rabano I; Stanton R; Sundararaman B; Wang R; Fu XD; Graveley BR; Yeo GW
    Genome Biol; 2020 Apr; 21(1):90. PubMed ID: 32252787
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Individual Nucleotide Resolution UV Cross-Linking and Immunoprecipitation (iCLIP) to Determine Protein-RNA Interactions.
    Sibley CR
    Methods Mol Biol; 2018; 1649():427-454. PubMed ID: 29130215
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Cross-linking and immunoprecipitation of nuclear RNA-binding proteins.
    Li Q; Uemura Y; Kawahara Y
    Methods Mol Biol; 2015; 1262():247-63. PubMed ID: 25555586
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Transcriptome-Wide Mapping of Protein-RNA Interactions.
    Bi X; Shen X
    Methods Mol Biol; 2020; 2161():161-173. PubMed ID: 32681512
    [TBL] [Abstract][Full Text] [Related]  

  • 9. CRISPR/Cas9-mediated integration enables TAG-eCLIP of endogenously tagged RNA binding proteins.
    Van Nostrand EL; Gelboin-Burkhart C; Wang R; Pratt GA; Blue SM; Yeo GW
    Methods; 2017 Apr; 118-119():50-59. PubMed ID: 28003131
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Transcriptome-wide Identification of RNA-binding Protein Binding Sites Using Photoactivatable-Ribonucleoside-Enhanced Crosslinking Immunoprecipitation (PAR-CLIP).
    Maatz H; Kolinski M; Hubner N; Landthaler M
    Curr Protoc Mol Biol; 2017 Apr; 118():27.6.1-27.6.19. PubMed ID: 28369676
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Multiplexed transcriptome discovery of RNA-binding protein binding sites by antibody-barcode eCLIP.
    Lorenz DA; Her HL; Shen KA; Rothamel K; Hutt KR; Nojadera AC; Bruns SC; Manakov SA; Yee BA; Chapman KB; Yeo GW
    Nat Methods; 2023 Jan; 20(1):65-69. PubMed ID: 36550273
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A Pipeline for Analyzing eCLIP and iCLIP Data with Htseq-clip and DEWSeq.
    Sahadevan S; Sekaran T; Schwarzl T
    Methods Mol Biol; 2022; 2404():189-205. PubMed ID: 34694610
    [TBL] [Abstract][Full Text] [Related]  

  • 13. PAR-CLIP: A Method for Transcriptome-Wide Identification of RNA Binding Protein Interaction Sites.
    Danan C; Manickavel S; Hafner M
    Methods Mol Biol; 2016; 1358():153-73. PubMed ID: 26463383
    [TBL] [Abstract][Full Text] [Related]  

  • 14. PAR-CLIP for Discovering Target Sites of RNA-Binding Proteins.
    Garzia A; Morozov P; Sajek M; Meyer C; Tuschl T
    Methods Mol Biol; 2018; 1720():55-75. PubMed ID: 29236251
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Enhanced CLIP Uncovers IMP Protein-RNA Targets in Human Pluripotent Stem Cells Important for Cell Adhesion and Survival.
    Conway AE; Van Nostrand EL; Pratt GA; Aigner S; Wilbert ML; Sundararaman B; Freese P; Lambert NJ; Sathe S; Liang TY; Essex A; Landais S; Burge CB; Jones DL; Yeo GW
    Cell Rep; 2016 Apr; 15(3):666-679. PubMed ID: 27068461
    [TBL] [Abstract][Full Text] [Related]  

  • 16. CLIP: crosslinking and immunoprecipitation of in vivo RNA targets of RNA-binding proteins.
    Jensen KB; Darnell RB
    Methods Mol Biol; 2008; 488():85-98. PubMed ID: 18982285
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Evaluation of Post-transcriptional Gene Regulation in Pancreatic Cancer Cells: Studying RNA Binding Proteins and Their mRNA Targets.
    Jain A; Brown SZ; Thomsett HL; Londin E; Brody JR
    Methods Mol Biol; 2019; 1882():239-252. PubMed ID: 30378060
    [TBL] [Abstract][Full Text] [Related]  

  • 18. fSHAPE, fSHAPE-eCLIP, and SHAPE-eCLIP probe transcript regions that interact with specific proteins.
    Corley M; Flynn RA; Blue SM; Yee BA; Chang HY; Yeo GW
    STAR Protoc; 2021 Sep; 2(3):100762. PubMed ID: 34485935
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Genome-Wide Profiling of RNA-Protein Interactions Using CLIP-Seq.
    Stork C; Zheng S
    Methods Mol Biol; 2016; 1421():137-51. PubMed ID: 26965263
    [TBL] [Abstract][Full Text] [Related]  

  • 20. cCLIP-Seq: Retrieval of Chimeric Reads from HITS-CLIP (CLIP-Seq) Libraries.
    Alexiou P; Maragkakis M; Mourelatos Z; Vourekas A
    Methods Mol Biol; 2018; 1680():87-100. PubMed ID: 29030843
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.