These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
164 related articles for article (PubMed ID: 31158228)
21. Calibration and analysis of genome-based models for microbial ecology. Louca S; Doebeli M Elife; 2015 Oct; 4():e08208. PubMed ID: 26473972 [TBL] [Abstract][Full Text] [Related]
22. Reconstruction and modeling protein translocation and compartmentalization in Escherichia coli at the genome-scale. Liu JK; O'Brien EJ; Lerman JA; Zengler K; Palsson BO; Feist AM BMC Syst Biol; 2014 Sep; 8():110. PubMed ID: 25227965 [TBL] [Abstract][Full Text] [Related]
23. Genome-scale in silico aided metabolic analysis and flux comparisons of Escherichia coli to improve succinate production. Wang Q; Chen X; Yang Y; Zhao X Appl Microbiol Biotechnol; 2006 Dec; 73(4):887-94. PubMed ID: 16927085 [TBL] [Abstract][Full Text] [Related]
24. Constrained Allocation Flux Balance Analysis. Mori M; Hwa T; Martin OC; De Martino A; Marinari E PLoS Comput Biol; 2016 Jun; 12(6):e1004913. PubMed ID: 27355325 [TBL] [Abstract][Full Text] [Related]
25. Quantification and Classification of E. coli Proteome Utilization and Unused Protein Costs across Environments. O'Brien EJ; Utrilla J; Palsson BO PLoS Comput Biol; 2016 Jun; 12(6):e1004998. PubMed ID: 27351952 [TBL] [Abstract][Full Text] [Related]
26. Omic data from evolved E. coli are consistent with computed optimal growth from genome-scale models. Lewis NE; Hixson KK; Conrad TM; Lerman JA; Charusanti P; Polpitiya AD; Adkins JN; Schramm G; Purvine SO; Lopez-Ferrer D; Weitz KK; Eils R; König R; Smith RD; Palsson BØ Mol Syst Biol; 2010 Jul; 6():390. PubMed ID: 20664636 [TBL] [Abstract][Full Text] [Related]
27. Metabolic engineering of isopropyl alcohol-producing Escherichia coli strains with Okahashi N; Matsuda F; Yoshikawa K; Shirai T; Matsumoto Y; Wada M; Shimizu H Biotechnol Bioeng; 2017 Dec; 114(12):2782-2793. PubMed ID: 28755490 [TBL] [Abstract][Full Text] [Related]
28. Genome-wide transcriptome and proteome analysis of Escherichia coli expressing IrrE, a global regulator of Deinococcus radiodurans. Zhou Z; Zhang W; Chen M; Pan J; Lu W; Ping S; Yan Y; Hou X; Yuan M; Zhan Y; Lin M Mol Biosyst; 2011 May; 7(5):1613-20. PubMed ID: 21380435 [TBL] [Abstract][Full Text] [Related]
29. The plasticity of global proteome and genome expression analyzed in closely related W3110 and MG1655 strains of a well-studied model organism, Escherichia coli-K12. Vijayendran C; Polen T; Wendisch VF; Friehs K; Niehaus K; Flaschel E J Biotechnol; 2007 Mar; 128(4):747-61. PubMed ID: 17331609 [TBL] [Abstract][Full Text] [Related]
30. Modeling the cost and benefit of proteome regulation in a growing bacterial cell. Sharma P; Pandey PP; Jain S Phys Biol; 2018 May; 15(4):046005. PubMed ID: 29658492 [TBL] [Abstract][Full Text] [Related]
31. Metabolic capacity estimation of Escherichia coli as a platform for redox biocatalysis: constraint-based modeling and experimental verification. Blank LM; Ebert BE; Bühler B; Schmid A Biotechnol Bioeng; 2008 Aug; 100(6):1050-65. PubMed ID: 18553399 [TBL] [Abstract][Full Text] [Related]
32. Computation of condition-dependent proteome allocation reveals variability in the macro and micro nutrient requirements for growth. Lloyd CJ; Monk J; Yang L; Ebrahim A; Palsson BO PLoS Comput Biol; 2021 Jun; 17(6):e1007817. PubMed ID: 34161321 [TBL] [Abstract][Full Text] [Related]
33. Dissecting the genetic and metabolic mechanisms of adaptation to the knockout of a major metabolic enzyme in Long CP; Gonzalez JE; Feist AM; Palsson BO; Antoniewicz MR Proc Natl Acad Sci U S A; 2018 Jan; 115(1):222-227. PubMed ID: 29255023 [TBL] [Abstract][Full Text] [Related]
34. Cross-regulation between proteome reallocation and metabolic flux redistribution governs bacterial growth transition kinetics. Yuan H; Bai Y; Li X; Fu X Metab Eng; 2024 Mar; 82():60-68. PubMed ID: 38309620 [TBL] [Abstract][Full Text] [Related]
35. Alteration of the biochemical valves in the central metabolism of Escherichia coli. Liao JC; Chao YP; Patnaik R Ann N Y Acad Sci; 1994 Nov; 745():21-34. PubMed ID: 7832509 [TBL] [Abstract][Full Text] [Related]
36. A global resource allocation strategy governs growth transition kinetics of Escherichia coli. Erickson DW; Schink SJ; Patsalo V; Williamson JR; Gerland U; Hwa T Nature; 2017 Nov; 551(7678):119-123. PubMed ID: 29072300 [TBL] [Abstract][Full Text] [Related]
37. Generation of an E. coli platform strain for improved sucrose utilization using adaptive laboratory evolution. Mohamed ET; Mundhada H; Landberg J; Cann I; Mackie RI; Nielsen AT; Herrgård MJ; Feist AM Microb Cell Fact; 2019 Jun; 18(1):116. PubMed ID: 31255177 [TBL] [Abstract][Full Text] [Related]
38. Laboratory evolution of synthetic electron transport system variants reveals a larger metabolic respiratory system and its plasticity. Anand A; Patel A; Chen K; Olson CA; Phaneuf PV; Lamoureux C; Hefner Y; Szubin R; Feist AM; Palsson BO Nat Commun; 2022 Jun; 13(1):3682. PubMed ID: 35760776 [TBL] [Abstract][Full Text] [Related]
39. Characterizing Escherichia coli DH5alpha growth and metabolism in a complex medium using genome-scale flux analysis. Selvarasu S; Ow DS; Lee SY; Lee MM; Oh SK; Karimi IA; Lee DY Biotechnol Bioeng; 2009 Feb; 102(3):923-34. PubMed ID: 18853410 [TBL] [Abstract][Full Text] [Related]
40. Adaptive laboratory evolution of a genome-reduced Escherichia coli. Choe D; Lee JH; Yoo M; Hwang S; Sung BH; Cho S; Palsson B; Kim SC; Cho BK Nat Commun; 2019 Feb; 10(1):935. PubMed ID: 30804335 [TBL] [Abstract][Full Text] [Related] [Previous] [Next] [New Search]