These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
177 related articles for article (PubMed ID: 31183253)
41. Evaluating whole-genome sequencing quality metrics for enteric pathogen outbreaks. Wagner DD; Carleton HA; Trees E; Katz LS PeerJ; 2021; 9():e12446. PubMed ID: 34900416 [TBL] [Abstract][Full Text] [Related]
42. A Validation Approach of an End-to-End Whole Genome Sequencing Workflow for Source Tracking of Portmann AC; Fournier C; Gimonet J; Ngom-Bru C; Barretto C; Baert L Front Microbiol; 2018; 9():446. PubMed ID: 29593690 [TBL] [Abstract][Full Text] [Related]
43. Whole-Genome Single-Nucleotide Polymorphism (SNP) Analysis Applied Directly to Stool for Genotyping Shiga Toxin-Producing Escherichia coli: an Advanced Molecular Detection Method for Foodborne Disease Surveillance and Outbreak Tracking. Singh N; Lapierre P; Quinlan TM; Halse TA; Wirth S; Dickinson MC; Lasek-Nesselquist E; Musser KA J Clin Microbiol; 2019 Jul; 57(7):. PubMed ID: 31068414 [TBL] [Abstract][Full Text] [Related]
44. Benchmark datasets for phylogenomic pipeline validation, applications for foodborne pathogen surveillance. Timme RE; Rand H; Shumway M; Trees EK; Simmons M; Agarwala R; Davis S; Tillman GE; Defibaugh-Chavez S; Carleton HA; Klimke WA; Katz LS PeerJ; 2017; 5():e3893. PubMed ID: 29372115 [TBL] [Abstract][Full Text] [Related]
45. Illumina error correction near highly repetitive DNA regions improves de novo genome assembly. Heydari M; Miclotte G; Van de Peer Y; Fostier J BMC Bioinformatics; 2019 Jun; 20(1):298. PubMed ID: 31159722 [TBL] [Abstract][Full Text] [Related]
46. Survey on the Use of Whole-Genome Sequencing for Infectious Diseases Surveillance: Rapid Expansion of European National Capacities, 2015-2016. Revez J; Espinosa L; Albiger B; Leitmeyer KC; Struelens MJ; Front Public Health; 2017; 5():347. PubMed ID: 29326921 [TBL] [Abstract][Full Text] [Related]
47. Whole-genome sequencing for national surveillance of Shiga toxin-producing Escherichia coli O157. Dallman TJ; Byrne L; Ashton PM; Cowley LA; Perry NT; Adak G; Petrovska L; Ellis RJ; Elson R; Underwood A; Green J; Hanage WP; Jenkins C; Grant K; Wain J Clin Infect Dis; 2015 Aug; 61(3):305-12. PubMed ID: 25888672 [TBL] [Abstract][Full Text] [Related]
48. SEXCMD: Development and validation of sex marker sequences for whole-exome/genome and RNA sequencing. Jeong S; Kim J; Park W; Jeon H; Kim N PLoS One; 2017; 12(9):e0184087. PubMed ID: 28886064 [TBL] [Abstract][Full Text] [Related]
49. Diep B; Barretto C; Portmann AC; Fournier C; Karczmarek A; Voets G; Li S; Deng X; Klijn A Front Microbiol; 2019; 10():2554. PubMed ID: 31781065 [No Abstract] [Full Text] [Related]
50. Castanet: a pipeline for rapid analysis of targeted multi-pathogen genomic data. Mayne R; Secret S; Geoghegan C; Trebes A; Kean K; Reid K; Lin GL; Ansari MA; de Cesare M; Bonsall D; Elliott I; Piazza P; Brown A; Bray J; Knight JC; Harvala H; Breuer J; Simmonds P; Bowden RJ; Golubchik T Bioinformatics; 2024 Oct; 40(10):. PubMed ID: 39360992 [TBL] [Abstract][Full Text] [Related]
51. Insights from genome-wide approaches to identify variants associated to phenotypes at pan-genome scale: Application to L. monocytogenes' ability to grow in cold conditions. Fritsch L; Felten A; Palma F; Mariet JF; Radomski N; Mistou MY; Augustin JC; Guillier L Int J Food Microbiol; 2019 Feb; 291():181-188. PubMed ID: 30530095 [TBL] [Abstract][Full Text] [Related]
52. Surveillance of invasive meningococcal disease based on whole genome sequencing (WGS), Czech Republic, 2015. Křížová P; Honskus M; Okonji Z; Musílek M; Kozáková J Epidemiol Mikrobiol Imunol; 2018; 67(2):64-73. PubMed ID: 30126283 [TBL] [Abstract][Full Text] [Related]
53. Whole Genome and Core Genome Multilocus Sequence Typing and Single Nucleotide Polymorphism Analyses of Listeria monocytogenes Isolates Associated with an Outbreak Linked to Cheese, United States, 2013. Chen Y; Luo Y; Carleton H; Timme R; Melka D; Muruvanda T; Wang C; Kastanis G; Katz LS; Turner L; Fritzinger A; Moore T; Stones R; Blankenship J; Salter M; Parish M; Hammack TS; Evans PS; Tarr CL; Allard MW; Strain EA; Brown EW Appl Environ Microbiol; 2017 Aug; 83(15):. PubMed ID: 28550058 [TBL] [Abstract][Full Text] [Related]
54. Whole genome sequencing to characterize shiga toxin-producing Escherichia coli O26 in a public health setting. Abdalhamid B; Mccutchen EL; Bouska AC; Weiwei Z; Loeck B; Hinrichs SH; Iwen PC J Infect Public Health; 2019; 12(6):884-889. PubMed ID: 31229413 [TBL] [Abstract][Full Text] [Related]
55. Challenging a bioinformatic tool's ability to detect microbial contaminants using Olson ND; Zook JM; Morrow JB; Lin NJ PeerJ; 2017; 5():e3729. PubMed ID: 28924496 [TBL] [Abstract][Full Text] [Related]
56. Selection of marker genes for genetic barcoding of microorganisms and binning of metagenomic reads by Barcoder software tools. Rotimi AM; Pierneef R; Reva ON BMC Bioinformatics; 2018 Aug; 19(1):309. PubMed ID: 30165813 [TBL] [Abstract][Full Text] [Related]
57. KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies. Mapleson D; Garcia Accinelli G; Kettleborough G; Wright J; Clavijo BJ Bioinformatics; 2017 Feb; 33(4):574-576. PubMed ID: 27797770 [TBL] [Abstract][Full Text] [Related]
58. From cytogenetics to cytogenomics: whole-genome sequencing as a first-line test comprehensively captures the diverse spectrum of disease-causing genetic variation underlying intellectual disability. Lindstrand A; Eisfeldt J; Pettersson M; Carvalho CMB; Kvarnung M; Grigelioniene G; Anderlid BM; Bjerin O; Gustavsson P; Hammarsjö A; Georgii-Hemming P; Iwarsson E; Johansson-Soller M; Lagerstedt-Robinson K; Lieden A; Magnusson M; Martin M; Malmgren H; Nordenskjöld M; Norling A; Sahlin E; Stranneheim H; Tham E; Wincent J; Ygberg S; Wedell A; Wirta V; Nordgren A; Lundin J; Nilsson D Genome Med; 2019 Nov; 11(1):68. PubMed ID: 31694722 [TBL] [Abstract][Full Text] [Related]
59. Hierarchical discovery of large-scale and focal copy number alterations in low-coverage cancer genomes. Khalil AIS; Khyriem C; Chattopadhyay A; Sanyal A BMC Bioinformatics; 2020 Apr; 21(1):147. PubMed ID: 32299346 [TBL] [Abstract][Full Text] [Related]
60. Read-Split-Run: an improved bioinformatics pipeline for identification of genome-wide non-canonical spliced regions using RNA-Seq data. Bai Y; Kinne J; Donham B; Jiang F; Ding L; Hassler JR; Kaufman RJ BMC Genomics; 2016 Aug; 17 Suppl 7(Suppl 7):503. PubMed ID: 27556805 [TBL] [Abstract][Full Text] [Related] [Previous] [Next] [New Search]