These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
331 related articles for article (PubMed ID: 31195976)
21. methylGSA: a Bioconductor package and Shiny app for DNA methylation data length bias adjustment in gene set testing. Ren X; Kuan PF Bioinformatics; 2019 Jun; 35(11):1958-1959. PubMed ID: 30346483 [TBL] [Abstract][Full Text] [Related]
22. RNASeqGUI: a GUI for analysing RNA-Seq data. Russo F; Angelini C Bioinformatics; 2014 Sep; 30(17):2514-6. PubMed ID: 24812338 [TBL] [Abstract][Full Text] [Related]
23. GUIDEseq: a bioconductor package to analyze GUIDE-Seq datasets for CRISPR-Cas nucleases. Zhu LJ; Lawrence M; Gupta A; Pagès H; Kucukural A; Garber M; Wolfe SA BMC Genomics; 2017 May; 18(1):379. PubMed ID: 28506212 [TBL] [Abstract][Full Text] [Related]
24. GSEPD: a Bioconductor package for RNA-seq gene set enrichment and projection display. Stamm K; Tomita-Mitchell A; Bozdag S BMC Bioinformatics; 2019 Mar; 20(1):115. PubMed ID: 30841846 [TBL] [Abstract][Full Text] [Related]
25. NewWave: a scalable R/Bioconductor package for the dimensionality reduction and batch effect removal of single-cell RNA-seq data. Agostinis F; Romualdi C; Sales G; Risso D Bioinformatics; 2022 Apr; 38(9):2648-2650. PubMed ID: 35266509 [TBL] [Abstract][Full Text] [Related]
26. A flexible count data model to fit the wide diversity of expression profiles arising from extensively replicated RNA-seq experiments. Esnaola M; Puig P; Gonzalez D; Castelo R; Gonzalez JR BMC Bioinformatics; 2013 Aug; 14():254. PubMed ID: 23965047 [TBL] [Abstract][Full Text] [Related]
27. Importing ArrayExpress datasets into R/Bioconductor. Kauffmann A; Rayner TF; Parkinson H; Kapushesky M; Lukk M; Brazma A; Huber W Bioinformatics; 2009 Aug; 25(16):2092-4. PubMed ID: 19505942 [TBL] [Abstract][Full Text] [Related]
29. GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, miRNA and mRNA data in GDC. Li R; Qu H; Wang S; Wei J; Zhang L; Ma R; Lu J; Zhu J; Zhong WD; Jia Z Bioinformatics; 2018 Jul; 34(14):2515-2517. PubMed ID: 29509844 [TBL] [Abstract][Full Text] [Related]
30. The Risa R/Bioconductor package: integrative data analysis from experimental metadata and back again. González-Beltrán A; Neumann S; Maguire E; Sansone SA; Rocca-Serra P BMC Bioinformatics; 2014; 15 Suppl 1(Suppl 1):S11. PubMed ID: 24564732 [TBL] [Abstract][Full Text] [Related]
31. Sincell: an R/Bioconductor package for statistical assessment of cell-state hierarchies from single-cell RNA-seq. Juliá M; Telenti A; Rausell A Bioinformatics; 2015 Oct; 31(20):3380-2. PubMed ID: 26099264 [TBL] [Abstract][Full Text] [Related]
32. DEsubs: an R package for flexible identification of differentially expressed subpathways using RNA-seq experiments. Vrahatis AG; Balomenos P; Tsakalidis AK; Bezerianos A Bioinformatics; 2016 Dec; 32(24):3844-3846. PubMed ID: 27542770 [TBL] [Abstract][Full Text] [Related]
33. QuickRNASeq lifts large-scale RNA-seq data analyses to the next level of automation and interactive visualization. Zhao S; Xi L; Quan J; Xi H; Zhang Y; von Schack D; Vincent M; Zhang B BMC Genomics; 2016 Jan; 17():39. PubMed ID: 26747388 [TBL] [Abstract][Full Text] [Related]
34. SeqGSEA: a Bioconductor package for gene set enrichment analysis of RNA-Seq data integrating differential expression and splicing. Wang X; Cairns MJ Bioinformatics; 2014 Jun; 30(12):1777-9. PubMed ID: 24535097 [TBL] [Abstract][Full Text] [Related]
35. FindIT2: an R/Bioconductor package to identify influential transcription factor and targets based on multi-omics data. Shang GD; Xu ZG; Wan MC; Wang FX; Wang JW BMC Genomics; 2022 Apr; 23(Suppl 1):272. PubMed ID: 35392802 [TBL] [Abstract][Full Text] [Related]
36. SPEAQeasy: a scalable pipeline for expression analysis and quantification for R/bioconductor-powered RNA-seq analyses. Eagles NJ; Burke EE; Leonard J; Barry BK; Stolz JM; Huuki L; Phan BN; Serrato VL; Gutiérrez-Millán E; Aguilar-Ordoñez I; Jaffe AE; Collado-Torres L BMC Bioinformatics; 2021 May; 22(1):224. PubMed ID: 33932985 [TBL] [Abstract][Full Text] [Related]
37. phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data. McMurdie PJ; Holmes S PLoS One; 2013; 8(4):e61217. PubMed ID: 23630581 [TBL] [Abstract][Full Text] [Related]
38. Next maSigPro: updating maSigPro bioconductor package for RNA-seq time series. Nueda MJ; Tarazona S; Conesa A Bioinformatics; 2014 Sep; 30(18):2598-602. PubMed ID: 24894503 [TBL] [Abstract][Full Text] [Related]
39. Facilitating pathway and network based analysis of RNA-Seq data with pathlinkR. Blimkie TM; An A; Hancock REW PLoS Comput Biol; 2024 Sep; 20(9):e1012422. PubMed ID: 39283925 [TBL] [Abstract][Full Text] [Related]
40. CellTree: an R/bioconductor package to infer the hierarchical structure of cell populations from single-cell RNA-seq data. duVerle DA; Yotsukura S; Nomura S; Aburatani H; Tsuda K BMC Bioinformatics; 2016 Sep; 17(1):363. PubMed ID: 27620863 [TBL] [Abstract][Full Text] [Related] [Previous] [Next] [New Search]