BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

142 related articles for article (PubMed ID: 31198957)

  • 1. Testing clonal relatedness of two tumors from the same patient based on their mutational profiles: update of the Clonality R package.
    Mauguen A; Seshan VE; Begg CB; Ostrovnaya I
    Bioinformatics; 2019 Nov; 35(22):4776-4778. PubMed ID: 31198957
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Clonality: an R package for testing clonal relatedness of two tumors from the same patient based on their genomic profiles.
    Ostrovnaya I; Seshan VE; Olshen AB; Begg CB
    Bioinformatics; 2011 Jun; 27(12):1698-9. PubMed ID: 21546399
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Seq2pathway: an R/Bioconductor package for pathway analysis of next-generation sequencing data.
    Wang B; Cunningham JM; Yang XH
    Bioinformatics; 2015 Sep; 31(18):3043-5. PubMed ID: 25979472
    [TBL] [Abstract][Full Text] [Related]  

  • 4. DNAshapeR: an R/Bioconductor package for DNA shape prediction and feature encoding.
    Chiu TP; Comoglio F; Zhou T; Yang L; Paro R; Rohs R
    Bioinformatics; 2016 Apr; 32(8):1211-3. PubMed ID: 26668005
    [TBL] [Abstract][Full Text] [Related]  

  • 5. BubbleTree: an intuitive visualization to elucidate tumoral aneuploidy and clonality using next generation sequencing data.
    Zhu W; Kuziora M; Creasy T; Lai Z; Morehouse C; Guo X; Sebastian Y; Shen D; Huang J; Dry JR; Xue F; Jiang L; Yao Y; Higgs BW
    Nucleic Acids Res; 2016 Feb; 44(4):e38. PubMed ID: 26578606
    [TBL] [Abstract][Full Text] [Related]  

  • 6. USING SOMATIC MUTATION DATA TO TEST TUMORS FOR CLONAL RELATEDNESS.
    Ostrovnaya I; Seshan VE; Begg CB
    Ann Appl Stat; 2015 Sep; 9(3):1533-1548. PubMed ID: 26594266
    [TBL] [Abstract][Full Text] [Related]  

  • 7. primirTSS: an R package for identifying cell-specific microRNA transcription start sites.
    Li P; Xu Q; Hua X; Xie Z; Li J; Wang J
    Bioinformatics; 2020 Jun; 36(11):3605-3606. PubMed ID: 32170928
    [TBL] [Abstract][Full Text] [Related]  

  • 8. CNVfilteR: an R/Bioconductor package to identify false positives produced by germline NGS CNV detection tools.
    Moreno-Cabrera JM; Del Valle J; Castellanos E; Feliubadaló L; Pineda M; Serra E; Capellá G; Lázaro C; Gel B
    Bioinformatics; 2021 Nov; 37(22):4227-4229. PubMed ID: 33983414
    [TBL] [Abstract][Full Text] [Related]  

  • 9. HilbertCurve: an R/Bioconductor package for high-resolution visualization of genomic data.
    Gu Z; Eils R; Schlesner M
    Bioinformatics; 2016 Aug; 32(15):2372-4. PubMed ID: 27153599
    [TBL] [Abstract][Full Text] [Related]  

  • 10. chimeraviz: a tool for visualizing chimeric RNA.
    Lågstad S; Zhao S; Hoff AM; Johannessen B; Lingjærde OC; Skotheim RI
    Bioinformatics; 2017 Sep; 33(18):2954-2956. PubMed ID: 28525538
    [TBL] [Abstract][Full Text] [Related]  

  • 11. easyRNASeq: a bioconductor package for processing RNA-Seq data.
    Delhomme N; Padioleau I; Furlong EE; Steinmetz LM
    Bioinformatics; 2012 Oct; 28(19):2532-3. PubMed ID: 22847932
    [TBL] [Abstract][Full Text] [Related]  

  • 12. QuasR: quantification and annotation of short reads in R.
    Gaidatzis D; Lerch A; Hahne F; Stadler MB
    Bioinformatics; 2015 Apr; 31(7):1130-2. PubMed ID: 25417205
    [TBL] [Abstract][Full Text] [Related]  

  • 13. signeR: an empirical Bayesian approach to mutational signature discovery.
    Rosales RA; Drummond RD; Valieris R; Dias-Neto E; da Silva IT
    Bioinformatics; 2017 Jan; 33(1):8-16. PubMed ID: 27591080
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Analysis of mutational signatures with yet another package for signature analysis.
    Hübschmann D; Jopp-Saile L; Andresen C; Krämer S; Gu Z; Heilig CE; Kreutzfeldt S; Teleanu V; Fröhling S; Eils R; Schlesner M
    Genes Chromosomes Cancer; 2021 May; 60(5):314-331. PubMed ID: 33222322
    [TBL] [Abstract][Full Text] [Related]  

  • 15. APAlyzer: a bioinformatics package for analysis of alternative polyadenylation isoforms.
    Wang R; Tian B
    Bioinformatics; 2020 Jun; 36(12):3907-3909. PubMed ID: 32321166
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Genefu: an R/Bioconductor package for computation of gene expression-based signatures in breast cancer.
    Gendoo DM; Ratanasirigulchai N; Schröder MS; Paré L; Parker JS; Prat A; Haibe-Kains B
    Bioinformatics; 2016 Apr; 32(7):1097-9. PubMed ID: 26607490
    [TBL] [Abstract][Full Text] [Related]  

  • 17. msa: an R package for multiple sequence alignment.
    Bodenhofer U; Bonatesta E; Horejš-Kainrath C; Hochreiter S
    Bioinformatics; 2015 Dec; 31(24):3997-9. PubMed ID: 26315911
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays.
    Aryee MJ; Jaffe AE; Corrada-Bravo H; Ladd-Acosta C; Feinberg AP; Hansen KD; Irizarry RA
    Bioinformatics; 2014 May; 30(10):1363-9. PubMed ID: 24478339
    [TBL] [Abstract][Full Text] [Related]  

  • 19. rTANDEM, an R/Bioconductor package for MS/MS protein identification.
    Fournier F; Joly Beauparlant C; Paradis R; Droit A
    Bioinformatics; 2014 Aug; 30(15):2233-4. PubMed ID: 24700319
    [TBL] [Abstract][Full Text] [Related]  

  • 20. VegaMC: a R/bioconductor package for fast downstream analysis of large array comparative genomic hybridization datasets.
    Morganella S; Ceccarelli M
    Bioinformatics; 2012 Oct; 28(19):2512-4. PubMed ID: 22815357
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.