206 related articles for article (PubMed ID: 31208993)
1. FusionPro, a Versatile Proteogenomic Tool for Identification of Novel Fusion Transcripts and Their Potential Translation Products in Cancer Cells.
Kim CY; Na K; Park S; Jeong SK; Cho JY; Shin H; Lee MJ; Han G; Paik YK
Mol Cell Proteomics; 2019 Aug; 18(8):1651-1668. PubMed ID: 31208993
[TBL] [Abstract][Full Text] [Related]
2. PROTEOFORMER 2.0: Further Developments in the Ribosome Profiling-assisted Proteogenomic Hunt for New Proteoforms.
Verbruggen S; Ndah E; Van Criekinge W; Gessulat S; Kuster B; Wilhelm M; Van Damme P; Menschaert G
Mol Cell Proteomics; 2019 Aug; 18(8 suppl 1):S126-S140. PubMed ID: 31040227
[TBL] [Abstract][Full Text] [Related]
3. Proteoform Identification by Combining RNA-Seq and Top-Down Mass Spectrometry.
Chen W; Liu X
J Proteome Res; 2021 Jan; 20(1):261-269. PubMed ID: 33183009
[TBL] [Abstract][Full Text] [Related]
4. Computational identification of micro-structural variations and their proteogenomic consequences in cancer.
Lin YY; Gawronski A; Hach F; Li S; Numanagic I; Sarrafi I; Mishra S; McPherson A; Collins CC; Radovich M; Tang H; Sahinalp SC
Bioinformatics; 2018 May; 34(10):1672-1681. PubMed ID: 29267878
[TBL] [Abstract][Full Text] [Related]
5. Spritz: A Proteogenomic Database Engine.
Cesnik AJ; Miller RM; Ibrahim K; Lu L; Millikin RJ; Shortreed MR; Frey BL; Smith LM
J Proteome Res; 2021 Apr; 20(4):1826-1834. PubMed ID: 32967423
[TBL] [Abstract][Full Text] [Related]
6. False discovery rate: the Achilles' heel of proteogenomics.
Aggarwal S; Raj A; Kumar D; Dash D; Yadav AK
Brief Bioinform; 2022 Sep; 23(5):. PubMed ID: 35534181
[TBL] [Abstract][Full Text] [Related]
7. Proteogenomics Integrating Novel Junction Peptide Identification Strategy Discovers Three Novel Protein Isoforms of Human NHSL1 and EEF1B2.
He C; Guo J; Tian W; Wong CCL
J Proteome Res; 2021 Dec; 20(12):5294-5303. PubMed ID: 34420305
[TBL] [Abstract][Full Text] [Related]
8. Proteogenomics from a bioinformatics angle: A growing field.
Menschaert G; Fenyö D
Mass Spectrom Rev; 2017 Sep; 36(5):584-599. PubMed ID: 26670565
[TBL] [Abstract][Full Text] [Related]
9. Evaluating the effect of database inflation in proteogenomic search on sensitive and reliable peptide identification.
Li H; Joh YS; Kim H; Paek E; Lee SW; Hwang KB
BMC Genomics; 2016 Dec; 17(Suppl 13):1031. PubMed ID: 28155652
[TBL] [Abstract][Full Text] [Related]
10. Discovery and mass spectrometric analysis of novel splice-junction peptides using RNA-Seq.
Sheynkman GM; Shortreed MR; Frey BL; Smith LM
Mol Cell Proteomics; 2013 Aug; 12(8):2341-53. PubMed ID: 23629695
[TBL] [Abstract][Full Text] [Related]
11. Identification of new protein coding sequences and signal peptidase cleavage sites of Helicobacter pylori strain 26695 by proteogenomics.
Müller SA; Findeiß S; Pernitzsch SR; Wissenbach DK; Stadler PF; Hofacker IL; von Bergen M; Kalkhof S
J Proteomics; 2013 Jun; 86():27-42. PubMed ID: 23665149
[TBL] [Abstract][Full Text] [Related]
12. Proteogenomics: From next-generation sequencing (NGS) and mass spectrometry-based proteomics to precision medicine.
Ang MY; Low TY; Lee PY; Wan Mohamad Nazarie WF; Guryev V; Jamal R
Clin Chim Acta; 2019 Nov; 498():38-46. PubMed ID: 31421119
[TBL] [Abstract][Full Text] [Related]
13. Proteogenomic Analysis of Breast Cancer Transcriptomic and Proteomic Data, Using De Novo Transcript Assembly: Genome-Wide Identification of Novel Peptides and Clinical Implications.
Hari PS; Balakrishnan L; Kotyada C; Everad John A; Tiwary S; Shah N; Sirdeshmukh R
Mol Cell Proteomics; 2022 Apr; 21(4):100220. PubMed ID: 35227895
[TBL] [Abstract][Full Text] [Related]
14. A Massive Proteogenomic Screen Identifies Thousands of Novel Peptides From the Human "Dark" Proteome.
Cao X; Sun S; Xing J
Mol Cell Proteomics; 2024 Feb; 23(2):100719. PubMed ID: 38242438
[TBL] [Abstract][Full Text] [Related]
15. Full-Length Transcript-Based Proteogenomics of Rice Improves Its Genome and Proteome Annotation.
Chen MX; Zhu FY; Gao B; Ma KL; Zhang Y; Fernie AR; Chen X; Dai L; Ye NH; Zhang X; Tian Y; Zhang D; Xiao S; Zhang J; Liu YG
Plant Physiol; 2020 Mar; 182(3):1510-1526. PubMed ID: 31857423
[TBL] [Abstract][Full Text] [Related]
16. The influence of transcript assembly on the proteogenomics discovery of microproteins.
Ma J; Saghatelian A; Shokhirev MN
PLoS One; 2018; 13(3):e0194518. PubMed ID: 29584760
[TBL] [Abstract][Full Text] [Related]
17. Proteogenomics Reveals Orthologous Alternatively Spliced Proteoforms in the Same Human and Mouse Brain Regions with Differential Abundance in an Alzheimer's Disease Mouse Model.
da Silva EMG; Santos LGC; de Oliveira FS; Freitas FCP; Parreira VDSC; Dos Santos HG; Tavares R; Carvalho PC; Neves-Ferreira AGDC; Haibara AS; de Araujo-Souza PS; Dias AAM; Passetti F
Cells; 2021 Jun; 10(7):. PubMed ID: 34201730
[TBL] [Abstract][Full Text] [Related]
18. Flexible Data Analysis Pipeline for High-Confidence Proteogenomics.
Weisser H; Wright JC; Mudge JM; Gutenbrunner P; Choudhary JS
J Proteome Res; 2016 Dec; 15(12):4686-4695. PubMed ID: 27786492
[TBL] [Abstract][Full Text] [Related]
19. PGTools: A Software Suite for Proteogenomic Data Analysis and Visualization.
Nagaraj SH; Waddell N; Madugundu AK; Wood S; Jones A; Mandyam RA; Nones K; Pearson JV; Grimmond SM
J Proteome Res; 2015 May; 14(5):2255-66. PubMed ID: 25760677
[TBL] [Abstract][Full Text] [Related]
20. Proteogenomics: Key Driver for Clinical Discovery and Personalized Medicine.
Barbieri R; Guryev V; Brandsma CA; Suits F; Bischoff R; Horvatovich P
Adv Exp Med Biol; 2016; 926():21-47. PubMed ID: 27686804
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
