These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
200 related articles for article (PubMed ID: 31208993)
1. FusionPro, a Versatile Proteogenomic Tool for Identification of Novel Fusion Transcripts and Their Potential Translation Products in Cancer Cells. Kim CY; Na K; Park S; Jeong SK; Cho JY; Shin H; Lee MJ; Han G; Paik YK Mol Cell Proteomics; 2019 Aug; 18(8):1651-1668. PubMed ID: 31208993 [TBL] [Abstract][Full Text] [Related]
2. PROTEOFORMER 2.0: Further Developments in the Ribosome Profiling-assisted Proteogenomic Hunt for New Proteoforms. Verbruggen S; Ndah E; Van Criekinge W; Gessulat S; Kuster B; Wilhelm M; Van Damme P; Menschaert G Mol Cell Proteomics; 2019 Aug; 18(8 suppl 1):S126-S140. PubMed ID: 31040227 [TBL] [Abstract][Full Text] [Related]
3. Proteoform Identification by Combining RNA-Seq and Top-Down Mass Spectrometry. Chen W; Liu X J Proteome Res; 2021 Jan; 20(1):261-269. PubMed ID: 33183009 [TBL] [Abstract][Full Text] [Related]
4. Computational identification of micro-structural variations and their proteogenomic consequences in cancer. Lin YY; Gawronski A; Hach F; Li S; Numanagic I; Sarrafi I; Mishra S; McPherson A; Collins CC; Radovich M; Tang H; Sahinalp SC Bioinformatics; 2018 May; 34(10):1672-1681. PubMed ID: 29267878 [TBL] [Abstract][Full Text] [Related]
5. Spritz: A Proteogenomic Database Engine. Cesnik AJ; Miller RM; Ibrahim K; Lu L; Millikin RJ; Shortreed MR; Frey BL; Smith LM J Proteome Res; 2021 Apr; 20(4):1826-1834. PubMed ID: 32967423 [TBL] [Abstract][Full Text] [Related]
7. Proteogenomics Integrating Novel Junction Peptide Identification Strategy Discovers Three Novel Protein Isoforms of Human NHSL1 and EEF1B2. He C; Guo J; Tian W; Wong CCL J Proteome Res; 2021 Dec; 20(12):5294-5303. PubMed ID: 34420305 [TBL] [Abstract][Full Text] [Related]
8. Proteogenomics from a bioinformatics angle: A growing field. Menschaert G; Fenyö D Mass Spectrom Rev; 2017 Sep; 36(5):584-599. PubMed ID: 26670565 [TBL] [Abstract][Full Text] [Related]
9. Evaluating the effect of database inflation in proteogenomic search on sensitive and reliable peptide identification. Li H; Joh YS; Kim H; Paek E; Lee SW; Hwang KB BMC Genomics; 2016 Dec; 17(Suppl 13):1031. PubMed ID: 28155652 [TBL] [Abstract][Full Text] [Related]
10. Discovery and mass spectrometric analysis of novel splice-junction peptides using RNA-Seq. Sheynkman GM; Shortreed MR; Frey BL; Smith LM Mol Cell Proteomics; 2013 Aug; 12(8):2341-53. PubMed ID: 23629695 [TBL] [Abstract][Full Text] [Related]
11. Identification of new protein coding sequences and signal peptidase cleavage sites of Helicobacter pylori strain 26695 by proteogenomics. Müller SA; Findeiß S; Pernitzsch SR; Wissenbach DK; Stadler PF; Hofacker IL; von Bergen M; Kalkhof S J Proteomics; 2013 Jun; 86():27-42. PubMed ID: 23665149 [TBL] [Abstract][Full Text] [Related]
12. Proteogenomics: From next-generation sequencing (NGS) and mass spectrometry-based proteomics to precision medicine. Ang MY; Low TY; Lee PY; Wan Mohamad Nazarie WF; Guryev V; Jamal R Clin Chim Acta; 2019 Nov; 498():38-46. PubMed ID: 31421119 [TBL] [Abstract][Full Text] [Related]
13. Proteogenomic Analysis of Breast Cancer Transcriptomic and Proteomic Data, Using De Novo Transcript Assembly: Genome-Wide Identification of Novel Peptides and Clinical Implications. Hari PS; Balakrishnan L; Kotyada C; Everad John A; Tiwary S; Shah N; Sirdeshmukh R Mol Cell Proteomics; 2022 Apr; 21(4):100220. PubMed ID: 35227895 [TBL] [Abstract][Full Text] [Related]
14. A Massive Proteogenomic Screen Identifies Thousands of Novel Peptides From the Human "Dark" Proteome. Cao X; Sun S; Xing J Mol Cell Proteomics; 2024 Feb; 23(2):100719. PubMed ID: 38242438 [TBL] [Abstract][Full Text] [Related]
15. Full-Length Transcript-Based Proteogenomics of Rice Improves Its Genome and Proteome Annotation. Chen MX; Zhu FY; Gao B; Ma KL; Zhang Y; Fernie AR; Chen X; Dai L; Ye NH; Zhang X; Tian Y; Zhang D; Xiao S; Zhang J; Liu YG Plant Physiol; 2020 Mar; 182(3):1510-1526. PubMed ID: 31857423 [TBL] [Abstract][Full Text] [Related]
16. The influence of transcript assembly on the proteogenomics discovery of microproteins. Ma J; Saghatelian A; Shokhirev MN PLoS One; 2018; 13(3):e0194518. PubMed ID: 29584760 [TBL] [Abstract][Full Text] [Related]
17. Proteogenomics Reveals Orthologous Alternatively Spliced Proteoforms in the Same Human and Mouse Brain Regions with Differential Abundance in an Alzheimer's Disease Mouse Model. da Silva EMG; Santos LGC; de Oliveira FS; Freitas FCP; Parreira VDSC; Dos Santos HG; Tavares R; Carvalho PC; Neves-Ferreira AGDC; Haibara AS; de Araujo-Souza PS; Dias AAM; Passetti F Cells; 2021 Jun; 10(7):. PubMed ID: 34201730 [TBL] [Abstract][Full Text] [Related]