These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

174 related articles for article (PubMed ID: 31209473)

  • 1. Identifying Clusters of High Confidence Homologies in Multiple Sequence Alignments.
    Ali RH; Bogusz M; Whelan S
    Mol Biol Evol; 2019 Oct; 36(10):2340-2351. PubMed ID: 31209473
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Evidence of Statistical Inconsistency of Phylogenetic Methods in the Presence of Multiple Sequence Alignment Uncertainty.
    Md Mukarram Hossain AS; Blackburne BP; Shah A; Whelan S
    Genome Biol Evol; 2015 Jul; 7(8):2102-16. PubMed ID: 26139831
    [TBL] [Abstract][Full Text] [Related]  

  • 3. TCS: a new multiple sequence alignment reliability measure to estimate alignment accuracy and improve phylogenetic tree reconstruction.
    Chang JM; Di Tommaso P; Notredame C
    Mol Biol Evol; 2014 Jun; 31(6):1625-37. PubMed ID: 24694831
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Evaluating the usefulness of alignment filtering methods to reduce the impact of errors on evolutionary inferences.
    Di Franco A; Poujol R; Baurain D; Philippe H
    BMC Evol Biol; 2019 Jan; 19(1):21. PubMed ID: 30634908
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Efficient representation of uncertainty in multiple sequence alignments using directed acyclic graphs.
    Herman JL; Novák Á; Lyngsø R; Szabó A; Miklós I; Hein J
    BMC Bioinformatics; 2015 Apr; 16():108. PubMed ID: 25888064
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Characterization of pairwise and multiple sequence alignment errors.
    Landan G; Graur D
    Gene; 2009 Jul; 441(1-2):141-7. PubMed ID: 18614299
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Class of multiple sequence alignment algorithm affects genomic analysis.
    Blackburne BP; Whelan S
    Mol Biol Evol; 2013 Mar; 30(3):642-53. PubMed ID: 23144040
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Current Methods for Automated Filtering of Multiple Sequence Alignments Frequently Worsen Single-Gene Phylogenetic Inference.
    Tan G; Muffato M; Ledergerber C; Herrero J; Goldman N; Gil M; Dessimoz C
    Syst Biol; 2015 Sep; 64(5):778-91. PubMed ID: 26031838
    [TBL] [Abstract][Full Text] [Related]  

  • 9. GUIDANCE2: accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parameters.
    Sela I; Ashkenazy H; Katoh K; Pupko T
    Nucleic Acids Res; 2015 Jul; 43(W1):W7-14. PubMed ID: 25883146
    [TBL] [Abstract][Full Text] [Related]  

  • 10. PhyPA: Phylogenetic method with pairwise sequence alignment outperforms likelihood methods in phylogenetics involving highly diverged sequences.
    Xia X
    Mol Phylogenet Evol; 2016 Sep; 102():331-43. PubMed ID: 27377322
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Relative model selection of evolutionary substitution models can be sensitive to multiple sequence alignment uncertainty.
    Spielman SJ; Miraglia ML
    BMC Ecol Evol; 2021 Nov; 21(1):214. PubMed ID: 34844571
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Characterization of multiple sequence alignment errors using complete-likelihood score and position-shift map.
    Ezawa K
    BMC Bioinformatics; 2016 Mar; 17():133. PubMed ID: 26992851
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Measuring the distance between multiple sequence alignments.
    Blackburne BP; Whelan S
    Bioinformatics; 2012 Feb; 28(4):495-502. PubMed ID: 22199391
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Uncertainty in homology inferences: assessing and improving genomic sequence alignment.
    Lunter G; Rocco A; Mimouni N; Heger A; Caldeira A; Hein J
    Genome Res; 2008 Feb; 18(2):298-309. PubMed ID: 18073381
    [TBL] [Abstract][Full Text] [Related]  

  • 15. SuiteMSA: visual tools for multiple sequence alignment comparison and molecular sequence simulation.
    Anderson CL; Strope CL; Moriyama EN
    BMC Bioinformatics; 2011 May; 12():184. PubMed ID: 21600033
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A method of alignment masking for refining the phylogenetic signal of multiple sequence alignments.
    Rajan V
    Mol Biol Evol; 2013 Mar; 30(3):689-712. PubMed ID: 23193120
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Multiple Sequence Alignment Averaging Improves Phylogeny Reconstruction.
    Ashkenazy H; Sela I; Levy Karin E; Landan G; Pupko T
    Syst Biol; 2019 Jan; 68(1):117-130. PubMed ID: 29771363
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Multiobjective Formulation of Multiple Sequence Alignment for Phylogeny Inference.
    Nayeem MA; Bayzid MS; Rahman AH; Shahriyar R; Rahman MS
    IEEE Trans Cybern; 2022 May; 52(5):2775-2786. PubMed ID: 33044939
    [TBL] [Abstract][Full Text] [Related]  

  • 19. MAGUS: Multiple sequence Alignment using Graph clUStering.
    Smirnov V; Warnow T
    Bioinformatics; 2021 Jul; 37(12):1666-1672. PubMed ID: 33252662
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Multiple sequence alignment using partial order graphs.
    Lee C; Grasso C; Sharlow MF
    Bioinformatics; 2002 Mar; 18(3):452-64. PubMed ID: 11934745
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.