304 related articles for article (PubMed ID: 31218344)
1. iCn3D, a web-based 3D viewer for sharing 1D/2D/3D representations of biomolecular structures.
Wang J; Youkharibache P; Zhang D; Lanczycki CJ; Geer RC; Madej T; Phan L; Ward M; Lu S; Marchler GH; Wang Y; Bryant SH; Geer LY; Marchler-Bauer A
Bioinformatics; 2020 Jan; 36(1):131-135. PubMed ID: 31218344
[TBL] [Abstract][Full Text] [Related]
2. iCn3D: From Web-Based 3D Viewer to Structural Analysis Tool in Batch Mode.
Wang J; Youkharibache P; Marchler-Bauer A; Lanczycki C; Zhang D; Lu S; Madej T; Marchler GH; Cheng T; Chong LC; Zhao S; Yang K; Lin J; Cheng Z; Dunn R; Malkaram SA; Tai CH; Enoma D; Busby B; Johnson NL; Tabaro F; Song G; Ge Y
Front Mol Biosci; 2022; 9():831740. PubMed ID: 35252351
[TBL] [Abstract][Full Text] [Related]
3. RCSB protein Data Bank: exploring protein 3D similarities via comprehensive structural alignments.
Bittrich S; Segura J; Duarte JM; Burley SK; Rose Y
Bioinformatics; 2024 Jun; 40(6):. PubMed ID: 38870521
[TBL] [Abstract][Full Text] [Related]
4. Reactome diagram viewer: data structures and strategies to boost performance.
Fabregat A; Sidiropoulos K; Viteri G; Marin-Garcia P; Ping P; Stein L; D'Eustachio P; Hermjakob H
Bioinformatics; 2018 Apr; 34(7):1208-1214. PubMed ID: 29186351
[TBL] [Abstract][Full Text] [Related]
5. CDD: a database of conserved domain alignments with links to domain three-dimensional structure.
Marchler-Bauer A; Panchenko AR; Shoemaker BA; Thiessen PA; Geer LY; Bryant SH
Nucleic Acids Res; 2002 Jan; 30(1):281-3. PubMed ID: 11752315
[TBL] [Abstract][Full Text] [Related]
6. Using iCn3D and the World Wide Web for structure-based collaborative research: Analyzing molecular interactions at the root of COVID-19.
Youkharibache P; Cachau R; Madej T; Wang J
bioRxiv; 2020 Jul; ():. PubMed ID: 32637961
[TBL] [Abstract][Full Text] [Related]
7. 3DVizSNP: a tool for rapidly visualizing missense mutations identified in high throughput experiments in iCn3D.
Sierk M; Ratnayake S; Wagle MM; Chen B; Park B; Wang J; Youkharibache P; Meerzaman D
BMC Bioinformatics; 2023 Jun; 24(1):244. PubMed ID: 37296383
[TBL] [Abstract][Full Text] [Related]
8. Forna (force-directed RNA): Simple and effective online RNA secondary structure diagrams.
Kerpedjiev P; Hammer S; Hofacker IL
Bioinformatics; 2015 Oct; 31(20):3377-9. PubMed ID: 26099263
[TBL] [Abstract][Full Text] [Related]
9. G2S: a web-service for annotating genomic variants on 3D protein structures.
Wang J; Sheridan R; Sumer SO; Schultz N; Xu D; Gao J
Bioinformatics; 2018 Jun; 34(11):1949-1950. PubMed ID: 29385402
[TBL] [Abstract][Full Text] [Related]
10. MMDB: annotating protein sequences with Entrez's 3D-structure database.
Wang Y; Addess KJ; Chen J; Geer LY; He J; He S; Lu S; Madej T; Marchler-Bauer A; Thiessen PA; Zhang N; Bryant SH
Nucleic Acids Res; 2007 Jan; 35(Database issue):D298-300. PubMed ID: 17135201
[TBL] [Abstract][Full Text] [Related]
11. MMDB: 3D structures and macromolecular interactions.
Madej T; Addess KJ; Fong JH; Geer LY; Geer RC; Lanczycki CJ; Liu C; Lu S; Marchler-Bauer A; Panchenko AR; Chen J; Thiessen PA; Wang Y; Zhang D; Bryant SH
Nucleic Acids Res; 2012 Jan; 40(Database issue):D461-4. PubMed ID: 22135289
[TBL] [Abstract][Full Text] [Related]
12. Genomic databases and resources at the National Center for Biotechnology Information.
Tatusova T
Methods Mol Biol; 2010; 609():17-44. PubMed ID: 20221911
[TBL] [Abstract][Full Text] [Related]
13. Accessing NCBI data using the NCBI Sequence Viewer and Genome Data Viewer (GDV).
Rangwala SH; Kuznetsov A; Ananiev V; Asztalos A; Borodin E; Evgeniev V; Joukov V; Lotov V; Pannu R; Rudnev D; Shkeda A; Weitz EM; Schneider VA
Genome Res; 2021 Jan; 31(1):159-169. PubMed ID: 33239395
[TBL] [Abstract][Full Text] [Related]
14. GSP: a web-based platform for designing genome-specific primers in polyploids.
Wang Y; Tiwari VK; Rawat N; Gill BS; Huo N; You FM; Coleman-Derr D; Gu YQ
Bioinformatics; 2016 Aug; 32(15):2382-3. PubMed ID: 27153733
[TBL] [Abstract][Full Text] [Related]
15. Integrating genomic information with protein sequence and 3D atomic level structure at the RCSB protein data bank.
Prlic A; Kalro T; Bhattacharya R; Christie C; Burley SK; Rose PW
Bioinformatics; 2016 Dec; 32(24):3833-3835. PubMed ID: 27551105
[TBL] [Abstract][Full Text] [Related]
16. Mason: a JavaScript web site widget for visualizing and comparing annotated features in nucleotide or protein sequences.
Jaschob D; Davis TN; Riffle M
BMC Res Notes; 2015 Mar; 8():70. PubMed ID: 25884379
[TBL] [Abstract][Full Text] [Related]
17. Database resources of the National Center for Biotechnology Information.
Sayers EW; Agarwala R; Bolton EE; Brister JR; Canese K; Clark K; Connor R; Fiorini N; Funk K; Hefferon T; Holmes JB; Kim S; Kimchi A; Kitts PA; Lathrop S; Lu Z; Madden TL; Marchler-Bauer A; Phan L; Schneider VA; Schoch CL; Pruitt KD; Ostell J
Nucleic Acids Res; 2019 Jan; 47(D1):D23-D28. PubMed ID: 30395293
[TBL] [Abstract][Full Text] [Related]
18. PedigreeNet: a web-based pedigree viewer for biological databases.
Braun BL; Schott DA; Portwood JL; Andorf CM; Sen TZ
Bioinformatics; 2019 Oct; 35(20):4184-4186. PubMed ID: 30903182
[TBL] [Abstract][Full Text] [Related]
19. Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures.
Sehnal D; Bittrich S; Deshpande M; Svobodová R; Berka K; Bazgier V; Velankar S; Burley SK; Koča J; Rose AS
Nucleic Acids Res; 2021 Jul; 49(W1):W431-W437. PubMed ID: 33956157
[TBL] [Abstract][Full Text] [Related]
20. WashU Epigenome Browser update 2022.
Li D; Purushotham D; Harrison JK; Hsu S; Zhuo X; Fan C; Liu S; Xu V; Chen S; Xu J; Ouyang S; Wu AS; Wang T
Nucleic Acids Res; 2022 Jul; 50(W1):W774-W781. PubMed ID: 35412637
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
