261 related articles for article (PubMed ID: 31226278)
1. Modeling RNA-Binding Protein Specificity In Vivo by Precisely Registering Protein-RNA Crosslink Sites.
Feng H; Bao S; Rahman MA; Weyn-Vanhentenryck SM; Khan A; Wong J; Shah A; Flynn ED; Krainer AR; Zhang C
Mol Cell; 2019 Jun; 74(6):1189-1204.e6. PubMed ID: 31226278
[TBL] [Abstract][Full Text] [Related]
2. hnRNP A1 and the SR proteins ASF/SF2 and SC35 have antagonistic functions in splicing of beta-tropomyosin exon 6B.
Expert-Bezançon A; Sureau A; Durosay P; Salesse R; Groeneveld H; Lecaer JP; Marie J
J Biol Chem; 2004 Sep; 279(37):38249-59. PubMed ID: 15208309
[TBL] [Abstract][Full Text] [Related]
3. Robust transcriptome-wide discovery of RNA-binding protein binding sites with enhanced CLIP (eCLIP).
Van Nostrand EL; Pratt GA; Shishkin AA; Gelboin-Burkhart C; Fang MY; Sundararaman B; Blue SM; Nguyen TB; Surka C; Elkins K; Stanton R; Rigo F; Guttman M; Yeo GW
Nat Methods; 2016 Jun; 13(6):508-14. PubMed ID: 27018577
[TBL] [Abstract][Full Text] [Related]
4. Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Van Nostrand EL; Pratt GA; Yee BA; Wheeler EC; Blue SM; Mueller J; Park SS; Garcia KE; Gelboin-Burkhart C; Nguyen TB; Rabano I; Stanton R; Sundararaman B; Wang R; Fu XD; Graveley BR; Yeo GW
Genome Biol; 2020 Apr; 21(1):90. PubMed ID: 32252787
[TBL] [Abstract][Full Text] [Related]
5. Predicting sequence and structural specificities of RNA binding regions recognized by splicing factor SRSF1.
Wang X; Juan L; Lv J; Wang K; Sanford JR; Liu Y
BMC Genomics; 2011 Dec; 12 Suppl 5(Suppl 5):S8. PubMed ID: 22369183
[TBL] [Abstract][Full Text] [Related]
6. Unearthing a novel function of SRSF1 in binding and unfolding of RNA G-quadruplexes.
De Silva NIU; Lehman N; Fargason T; Paul T; Zhang Z; Zhang J
Nucleic Acids Res; 2024 May; 52(8):4676-4690. PubMed ID: 38567732
[TBL] [Abstract][Full Text] [Related]
7. Analysis of the structural determinants for RNA binding of the human protein AUF1/hnRNP D.
Moraes KC; Lee WH; Kobarg J
Biol Chem; 2002 May; 383(5):831-7. PubMed ID: 12108548
[TBL] [Abstract][Full Text] [Related]
8. PAR-CliP--a method to identify transcriptome-wide the binding sites of RNA binding proteins.
Hafner M; Landthaler M; Burger L; Khorshid M; Hausser J; Berninger P; Rothballer A; Ascano M; Jungkamp AC; Munschauer M; Ulrich A; Wardle GS; Dewell S; Zavolan M; Tuschl T
J Vis Exp; 2010 Jul; (41):. PubMed ID: 20644507
[TBL] [Abstract][Full Text] [Related]
9. CircSMARCA5 Inhibits Migration of Glioblastoma Multiforme Cells by Regulating a Molecular Axis Involving Splicing Factors SRSF1/SRSF3/PTB.
Barbagallo D; Caponnetto A; Cirnigliaro M; Brex D; Barbagallo C; D'Angeli F; Morrone A; Caltabiano R; Barbagallo GM; Ragusa M; Di Pietro C; Hansen TB; Purrello M
Int J Mol Sci; 2018 Feb; 19(2):. PubMed ID: 29415469
[TBL] [Abstract][Full Text] [Related]
10. A combined sequence and structure based method for discovering enriched motifs in RNA from in vivo binding data.
Polishchuk M; Paz I; Kohen R; Mesika R; Yakhini Z; Mandel-Gutfreund Y
Methods; 2017 Apr; 118-119():73-81. PubMed ID: 28274760
[TBL] [Abstract][Full Text] [Related]
11. mCarts: Genome-Wide Prediction of Clustered Sequence Motifs as Binding Sites for RNA-Binding Proteins.
Weyn-Vanhentenryck SM; Zhang C
Methods Mol Biol; 2016; 1421():215-26. PubMed ID: 26965268
[TBL] [Abstract][Full Text] [Related]
12. hnRNP A1 and hnRNP F modulate the alternative splicing of exon 11 of the insulin receptor gene.
Talukdar I; Sen S; Urbano R; Thompson J; Yates JR; Webster NJ
PLoS One; 2011; 6(11):e27869. PubMed ID: 22132154
[TBL] [Abstract][Full Text] [Related]
13. Transcriptome-wide Identification of RNA-binding Protein Binding Sites Using Photoactivatable-Ribonucleoside-Enhanced Crosslinking Immunoprecipitation (PAR-CLIP).
Maatz H; Kolinski M; Hubner N; Landthaler M
Curr Protoc Mol Biol; 2017 Apr; 118():27.6.1-27.6.19. PubMed ID: 28369676
[TBL] [Abstract][Full Text] [Related]
14. Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts.
Sanford JR; Wang X; Mort M; Vanduyn N; Cooper DN; Mooney SD; Edenberg HJ; Liu Y
Genome Res; 2009 Mar; 19(3):381-94. PubMed ID: 19116412
[TBL] [Abstract][Full Text] [Related]
15. Identification of S1 proteins B2, C1 and D1 as AUF1 isoforms and their major role as heterogeneous nuclear ribonucleoprotein proteins.
Inoue A; Arao Y; Omori A; Ichinose S; Nishio K; Yamamoto N; Kinoshita Y; Mita S
Biochem J; 2003 Jun; 372(Pt 3):775-85. PubMed ID: 12625834
[TBL] [Abstract][Full Text] [Related]
16. Leveraging cross-link modification events in CLIP-seq for motif discovery.
Bahrami-Samani E; Penalva LO; Smith AD; Uren PJ
Nucleic Acids Res; 2015 Jan; 43(1):95-103. PubMed ID: 25505146
[TBL] [Abstract][Full Text] [Related]
17. Structural determinants of human ζ-globin mRNA stability.
He Z; Song D; van Zalen S; Russell JE
J Hematol Oncol; 2014 Apr; 7():35. PubMed ID: 24751163
[TBL] [Abstract][Full Text] [Related]
18. Positional motif analysis reveals the extent of specificity of protein-RNA interactions observed by CLIP.
Kuret K; Amalietti AG; Jones DM; Capitanchik C; Ule J
Genome Biol; 2022 Sep; 23(1):191. PubMed ID: 36085079
[TBL] [Abstract][Full Text] [Related]
19. The RGG/RG motif of AUF1 isoform p45 is a key modulator of the protein's RNA chaperone and RNA annealing activities.
Meyer A; Golbik RP; Sänger L; Schmidt T; Behrens SE; Friedrich S
RNA Biol; 2019 Jul; 16(7):960-971. PubMed ID: 30951406
[TBL] [Abstract][Full Text] [Related]
20. A conserved sequence motif bridges two protein kinases for enhanced phosphorylation and nuclear function of a splicing factor.
Aubol BE; Fattet L; Adams JA
FEBS J; 2021 Jan; 288(2):566-581. PubMed ID: 32359191
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
