105 related articles for article (PubMed ID: 31237423)
1. Low-Input MNase Accessibility of Chromatin (Low-Input MACC).
Lion M; Tolstorukov MY; Oettinger MA
Curr Protoc Mol Biol; 2019 Jun; 127(1):e91. PubMed ID: 31237423
[TBL] [Abstract][Full Text] [Related]
2. Single-Assay Profiling of Nucleosome Occupancy and Chromatin Accessibility.
Cook A; Mieczkowski J; Tolstorukov MY
Curr Protoc Mol Biol; 2017 Oct; 120():21.34.1-21.34.18. PubMed ID: 28967996
[TBL] [Abstract][Full Text] [Related]
3. Profiling Nucleosome Occupancy by MNase-seq: Experimental Protocol and Computational Analysis.
Pajoro A; Muiño JM; Angenent GC; Kaufmann K
Methods Mol Biol; 2018; 1675():167-181. PubMed ID: 29052192
[TBL] [Abstract][Full Text] [Related]
4. MNase titration reveals differences between nucleosome occupancy and chromatin accessibility.
Mieczkowski J; Cook A; Bowman SK; Mueller B; Alver BH; Kundu S; Deaton AM; Urban JA; Larschan E; Park PJ; Kingston RE; Tolstorukov MY
Nat Commun; 2016 May; 7():11485. PubMed ID: 27151365
[TBL] [Abstract][Full Text] [Related]
5. DNA Accessibility by MNase Digestions.
Farrants AÖ
Methods Mol Biol; 2018; 1689():77-82. PubMed ID: 29027166
[TBL] [Abstract][Full Text] [Related]
6. Characterization of the Nucleosome Landscape by Micrococcal Nuclease-Sequencing (MNase-seq).
Hoeijmakers WAM; Bártfai R
Methods Mol Biol; 2018; 1689():83-101. PubMed ID: 29027167
[TBL] [Abstract][Full Text] [Related]
7. MNase-Seq Analysis for Identifying Stress-Altered Nucleosome Occupancy in Plants.
Watkins C; Willyerd KL; Liao CP; Ruhl DR; Chen C
Methods Mol Biol; 2024; 2832():33-46. PubMed ID: 38869785
[TBL] [Abstract][Full Text] [Related]
8. Standardized collection of MNase-seq experiments enables unbiased dataset comparisons.
Rizzo JM; Bard JE; Buck MJ
BMC Mol Biol; 2012 May; 13():15. PubMed ID: 22559821
[TBL] [Abstract][Full Text] [Related]
9. Subtracting the sequence bias from partially digested MNase-seq data reveals a general contribution of TFIIS to nucleosome positioning.
Gutiérrez G; Millán-Zambrano G; Medina DA; Jordán-Pla A; Pérez-Ortín JE; Peñate X; Chávez S
Epigenetics Chromatin; 2017 Dec; 10(1):58. PubMed ID: 29212533
[TBL] [Abstract][Full Text] [Related]
10. Analyses of Promoter , Enhancer, and Nucleosome Organization in Mammalian Cells by MNase-Seq.
Esnault C; Magat T; García-Oliver E; Andrau JC
Methods Mol Biol; 2021; 2351():93-104. PubMed ID: 34382185
[TBL] [Abstract][Full Text] [Related]
11. Analyzing the global chromatin structure of keratinocytes by MNase-seq.
Rizzo JM; Sinha S
Methods Mol Biol; 2014; 1195():49-59. PubMed ID: 24676786
[TBL] [Abstract][Full Text] [Related]
12. Widespread changes in nucleosome accessibility without changes in nucleosome occupancy during a rapid transcriptional induction.
Mueller B; Mieczkowski J; Kundu S; Wang P; Sadreyev R; Tolstorukov MY; Kingston RE
Genes Dev; 2017 Mar; 31(5):451-462. PubMed ID: 28356342
[TBL] [Abstract][Full Text] [Related]
13. Genome-wide mapping of nucleosome positions in yeast using high-resolution MNase ChIP-Seq.
Wal M; Pugh BF
Methods Enzymol; 2012; 513():233-50. PubMed ID: 22929772
[TBL] [Abstract][Full Text] [Related]
14. High-Resolution ChIP-MNase Mapping of Nucleosome Positions at Selected Genomic Loci and Alleles.
van Essen D; Oruba A; Saccani S
Methods Mol Biol; 2021; 2351():123-145. PubMed ID: 34382187
[TBL] [Abstract][Full Text] [Related]
15. Genome-wide mapping of nucleosome occupancy, histone modifications, and gene expression using next-generation sequencing technology.
Wei G; Hu G; Cui K; Zhao K
Methods Enzymol; 2012; 513():297-313. PubMed ID: 22929775
[TBL] [Abstract][Full Text] [Related]
16. Profiling Accessible Chromatin and Nucleosomes in the Mammalian Genome.
Lim HW; Iwafuchi M
Methods Mol Biol; 2023; 2599():59-68. PubMed ID: 36427143
[TBL] [Abstract][Full Text] [Related]
17. CAM: A quality control pipeline for MNase-seq data.
Hu S; Chen X; Liao J; Chen Y; Zhao C; Zhang Y
PLoS One; 2017; 12(8):e0182771. PubMed ID: 28787030
[TBL] [Abstract][Full Text] [Related]
18. Asymmetric nucleosomes flank promoters in the budding yeast genome.
Ramachandran S; Zentner GE; Henikoff S
Genome Res; 2015 Mar; 25(3):381-90. PubMed ID: 25491770
[TBL] [Abstract][Full Text] [Related]
19. High-Resolution Genome-Wide Mapping of Nucleosome Positioning and Occupancy Level Using Paired-End Sequencing Technology.
Brunelle M; Rodrigue S; Jacques PÉ; Gévry N
Methods Mol Biol; 2017; 1528():229-243. PubMed ID: 27854025
[TBL] [Abstract][Full Text] [Related]
20. Genome-Wide Identification of Open Chromatin in Plants Using MH-Seq.
Zhang A; Li X; Zhao H; Jiang J; Zhang W
Methods Mol Biol; 2023; 2594():29-43. PubMed ID: 36264486
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
