205 related articles for article (PubMed ID: 31238884)
1. Integration of CLIP experiments of RNA-binding proteins: a novel approach to predict context-dependent splicing factors from transcriptomic data.
Carazo F; Gimeno M; Ferrer-Bonsoms JA; Rubio A
BMC Genomics; 2019 Jun; 20(1):521. PubMed ID: 31238884
[TBL] [Abstract][Full Text] [Related]
2. CLIPdb: a CLIP-seq database for protein-RNA interactions.
Yang YC; Di C; Hu B; Zhou M; Liu Y; Song N; Li Y; Umetsu J; Lu ZJ
BMC Genomics; 2015 Feb; 16(1):51. PubMed ID: 25652745
[TBL] [Abstract][Full Text] [Related]
3. Seten: a tool for systematic identification and comparison of processes, phenotypes, and diseases associated with RNA-binding proteins from condition-specific CLIP-seq profiles.
Budak G; Srivastava R; Janga SC
RNA; 2017 Jun; 23(6):836-846. PubMed ID: 28336542
[TBL] [Abstract][Full Text] [Related]
4. A deep boosting based approach for capturing the sequence binding preferences of RNA-binding proteins from high-throughput CLIP-seq data.
Li S; Dong F; Wu Y; Zhang S; Zhang C; Liu X; Jiang T; Zeng J
Nucleic Acids Res; 2017 Aug; 45(14):e129. PubMed ID: 28575488
[TBL] [Abstract][Full Text] [Related]
5. Discovery of Allele-Specific Protein-RNA Interactions in Human Transcriptomes.
Bahrami-Samani E; Xing Y
Am J Hum Genet; 2019 Mar; 104(3):492-502. PubMed ID: 30827501
[TBL] [Abstract][Full Text] [Related]
6. Large-Scale Profiling of RBP-circRNA Interactions from Public CLIP-Seq Datasets.
Zhang M; Wang T; Xiao G; Xie Y
Genes (Basel); 2020 Jan; 11(1):. PubMed ID: 31947823
[TBL] [Abstract][Full Text] [Related]
7. Global regulation of alternative RNA splicing by the SR-rich protein RBM39.
Mai S; Qu X; Li P; Ma Q; Cao C; Liu X
Biochim Biophys Acta; 2016 Aug; 1859(8):1014-24. PubMed ID: 27354116
[TBL] [Abstract][Full Text] [Related]
8. rMAPS: RNA map analysis and plotting server for alternative exon regulation.
Park JW; Jung S; Rouchka EC; Tseng YT; Xing Y
Nucleic Acids Res; 2016 Jul; 44(W1):W333-8. PubMed ID: 27174931
[TBL] [Abstract][Full Text] [Related]
9. Computational Analysis of RNA-Protein Interactions via Deep Sequencing.
Li L; Förstner KU; Chao Y
Methods Mol Biol; 2018; 1751():171-182. PubMed ID: 29508297
[TBL] [Abstract][Full Text] [Related]
10. Mapping the Transcriptome-Wide Landscape of RBP Binding Sites Using gPAR-CLIP-seq: Bioinformatic Analysis.
Freeberg MA; Kim JK
Methods Mol Biol; 2016; 1361():91-104. PubMed ID: 26483018
[TBL] [Abstract][Full Text] [Related]
11. Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Van Nostrand EL; Pratt GA; Yee BA; Wheeler EC; Blue SM; Mueller J; Park SS; Garcia KE; Gelboin-Burkhart C; Nguyen TB; Rabano I; Stanton R; Sundararaman B; Wang R; Fu XD; Graveley BR; Yeo GW
Genome Biol; 2020 Apr; 21(1):90. PubMed ID: 32252787
[TBL] [Abstract][Full Text] [Related]
12. Transcriptome-wide Identification of RNA-binding Protein Binding Sites Using Photoactivatable-Ribonucleoside-Enhanced Crosslinking Immunoprecipitation (PAR-CLIP).
Maatz H; Kolinski M; Hubner N; Landthaler M
Curr Protoc Mol Biol; 2017 Apr; 118():27.6.1-27.6.19. PubMed ID: 28369676
[TBL] [Abstract][Full Text] [Related]
13. cCLIP-Seq: Retrieval of Chimeric Reads from HITS-CLIP (CLIP-Seq) Libraries.
Alexiou P; Maragkakis M; Mourelatos Z; Vourekas A
Methods Mol Biol; 2018; 1680():87-100. PubMed ID: 29030843
[TBL] [Abstract][Full Text] [Related]
14. CLIP-seq analysis of multi-mapped reads discovers novel functional RNA regulatory sites in the human transcriptome.
Zhang Z; Xing Y
Nucleic Acids Res; 2017 Sep; 45(16):9260-9271. PubMed ID: 28934506
[TBL] [Abstract][Full Text] [Related]
15. omniCLIP: probabilistic identification of protein-RNA interactions from CLIP-seq data.
Drewe-Boss P; Wessels HH; Ohler U
Genome Biol; 2018 Nov; 19(1):183. PubMed ID: 30384847
[TBL] [Abstract][Full Text] [Related]
16. A Pipeline for PAR-CLIP Data Analysis.
Jens M
Methods Mol Biol; 2016; 1358():197-207. PubMed ID: 26463385
[TBL] [Abstract][Full Text] [Related]
17. iCLIP--transcriptome-wide mapping of protein-RNA interactions with individual nucleotide resolution.
Konig J; Zarnack K; Rot G; Curk T; Kayikci M; Zupan B; Turner DJ; Luscombe NM; Ule J
J Vis Exp; 2011 Apr; (50):. PubMed ID: 21559008
[TBL] [Abstract][Full Text] [Related]
18. TF-RBP-AS Triplet Analysis Reveals the Mechanisms of Aberrant Alternative Splicing Events in Kidney Cancer: Implications for Their Possible Clinical Use as Prognostic and Therapeutic Biomarkers.
He M; Hu F
Int J Mol Sci; 2021 Aug; 22(16):. PubMed ID: 34445498
[TBL] [Abstract][Full Text] [Related]
19. Computational analysis of CLIP-seq data.
Uhl M; Houwaart T; Corrado G; Wright PR; Backofen R
Methods; 2017 Apr; 118-119():60-72. PubMed ID: 28254606
[TBL] [Abstract][Full Text] [Related]
20. Practical considerations on performing and analyzing CLIP-seq experiments to identify transcriptomic-wide RNA-protein interactions.
Chen X; Castro SA; Liu Q; Hu W; Zhang S
Methods; 2019 Feb; 155():49-57. PubMed ID: 30527764
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]