261 related articles for article (PubMed ID: 31248964)
1. The Tomato Translational Landscape Revealed by Transcriptome Assembly and Ribosome Profiling.
Wu HL; Song G; Walley JW; Hsu PY
Plant Physiol; 2019 Sep; 181(1):367-380. PubMed ID: 31248964
[TBL] [Abstract][Full Text] [Related]
2. Genome-wide identification of Arabidopsis non-AUG-initiated upstream ORFs with evolutionarily conserved regulatory sequences that control protein expression levels.
Hiragori Y; Takahashi H; Karino T; Kaido A; Hayashi N; Sasaki S; Nakao K; Motomura T; Yamashita Y; Naito S; Onouchi H
Plant Mol Biol; 2023 Jan; 111(1-2):37-55. PubMed ID: 36044152
[TBL] [Abstract][Full Text] [Related]
3. Transcriptional and translational landscape fine-tune genome annotation and explores translation control in cotton.
Qanmber G; You Q; Yang Z; Fan L; Zhang Z; Chai M; Gao B; Li F; Yang Z
J Adv Res; 2024 Apr; 58():13-30. PubMed ID: 37207930
[TBL] [Abstract][Full Text] [Related]
4. Improved super-resolution ribosome profiling reveals prevalent translation of upstream ORFs and small ORFs in Arabidopsis.
Wu HL; Ai Q; Teixeira RT; Nguyen PHT; Song G; Montes C; Elmore JM; Walley JW; Hsu PY
Plant Cell; 2024 Feb; 36(3):510-539. PubMed ID: 38000896
[TBL] [Abstract][Full Text] [Related]
5. Global analysis of ribosome-associated noncoding RNAs unveils new modes of translational regulation.
Bazin J; Baerenfaller K; Gosai SJ; Gregory BD; Crespi M; Bailey-Serres J
Proc Natl Acad Sci U S A; 2017 Nov; 114(46):E10018-E10027. PubMed ID: 29087317
[TBL] [Abstract][Full Text] [Related]
6. Global analysis of boron-induced ribosome stalling reveals its effects on translation termination and unique regulation by AUG-stops in Arabidopsis shoots.
Sotta N; Chiba Y; Miwa K; Takamatsu S; Tanaka M; Yamashita Y; Naito S; Fujiwara T
Plant J; 2021 Jun; 106(5):1455-1467. PubMed ID: 33772920
[TBL] [Abstract][Full Text] [Related]
7. Translational Landscape of Protein-Coding and Non-Protein-Coding RNAs upon Light Exposure in Arabidopsis.
Kurihara Y; Makita Y; Shimohira H; Fujita T; Iwasaki S; Matsui M
Plant Cell Physiol; 2020 Mar; 61(3):536-545. PubMed ID: 31794029
[TBL] [Abstract][Full Text] [Related]
8. Identification of Arabidopsis thaliana upstream open reading frames encoding peptide sequences that cause ribosomal arrest.
Hayashi N; Sasaki S; Takahashi H; Yamashita Y; Naito S; Onouchi H
Nucleic Acids Res; 2017 Sep; 45(15):8844-8858. PubMed ID: 28637336
[TBL] [Abstract][Full Text] [Related]
9. Discovery of Unannotated Small Open Reading Frames in Streptococcus pneumoniae D39 Involved in Quorum Sensing and Virulence Using Ribosome Profiling.
Laczkovich I; Mangano K; Shao X; Hockenberry AJ; Gao Y; Mankin A; Vázquez-Laslop N; Federle MJ
mBio; 2022 Aug; 13(4):e0124722. PubMed ID: 35852327
[TBL] [Abstract][Full Text] [Related]
10. The translational landscape of bread wheat during grain development.
Guo Y; Chen Y; Wang Y; Wu X; Zhang X; Mao W; Yu H; Guo K; Xu J; Ma L; Guo W; Hu Z; Xin M; Yao Y; Ni Z; Sun Q; Peng H
Plant Cell; 2023 May; 35(6):1848-1867. PubMed ID: 36905284
[TBL] [Abstract][Full Text] [Related]
11. Conservation of uORF repressiveness and sequence features in mouse, human and zebrafish.
Chew GL; Pauli A; Schier AF
Nat Commun; 2016 May; 7():11663. PubMed ID: 27216465
[TBL] [Abstract][Full Text] [Related]
12. Novel pipeline identifies new upstream ORFs and non-AUG initiating main ORFs with conserved amino acid sequences in the 5' leader of mRNAs in
van der Horst S; Snel B; Hanson J; Smeekens S
RNA; 2019 Mar; 25(3):292-304. PubMed ID: 30567971
[TBL] [Abstract][Full Text] [Related]
13. uORF-Tools-Workflow for the determination of translation-regulatory upstream open reading frames.
Scholz A; Eggenhofer F; Gelhausen R; Grüning B; Zarnack K; Brüne B; Backofen R; Schmid T
PLoS One; 2019; 14(9):e0222459. PubMed ID: 31513641
[TBL] [Abstract][Full Text] [Related]
14. Dual modes of natural selection on upstream open reading frames.
Neafsey DE; Galagan JE
Mol Biol Evol; 2007 Aug; 24(8):1744-51. PubMed ID: 17494029
[TBL] [Abstract][Full Text] [Related]
15. Ultra-deep sequencing of ribosome-associated poly-adenylated RNA in early Drosophila embryos reveals hundreds of conserved translated sORFs.
Li H; Hu C; Bai L; Li H; Li M; Zhao X; Czajkowsky DM; Shao Z
DNA Res; 2016 Dec; 23(6):571-580. PubMed ID: 27559081
[TBL] [Abstract][Full Text] [Related]
16. Pateamine A-sensitive ribosome profiling reveals the scope of translation in mouse embryonic stem cells.
Popa A; Lebrigand K; Barbry P; Waldmann R
BMC Genomics; 2016 Jan; 17():52. PubMed ID: 26764022
[TBL] [Abstract][Full Text] [Related]
17. Combining in silico prediction and ribosome profiling in a genome-wide search for novel putatively coding sORFs.
Crappé J; Van Criekinge W; Trooskens G; Hayakawa E; Luyten W; Baggerman G; Menschaert G
BMC Genomics; 2013 Sep; 14():648. PubMed ID: 24059539
[TBL] [Abstract][Full Text] [Related]
18. Ribosome profiling reveals the rhythmic liver translatome and circadian clock regulation by upstream open reading frames.
Janich P; Arpat AB; Castelo-Szekely V; Lopes M; Gatfield D
Genome Res; 2015 Dec; 25(12):1848-59. PubMed ID: 26486724
[TBL] [Abstract][Full Text] [Related]
19. Small but Mighty: Functional Peptides Encoded by Small ORFs in Plants.
Hsu PY; Benfey PN
Proteomics; 2018 May; 18(10):e1700038. PubMed ID: 28759167
[TBL] [Abstract][Full Text] [Related]
20. Genome-wide search for novel human uORFs and N-terminal protein extensions using ribosomal footprinting.
Fritsch C; Herrmann A; Nothnagel M; Szafranski K; Huse K; Schumann F; Schreiber S; Platzer M; Krawczak M; Hampe J; Brosch M
Genome Res; 2012 Nov; 22(11):2208-18. PubMed ID: 22879431
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]