124 related articles for article (PubMed ID: 31258549)
1. L1000 Viewer: A Search Engine and Web Interface for the LINCS Data Repository.
Musa A; Tripathi S; Dehmer M; Emmert-Streib F
Front Genet; 2019; 10():557. PubMed ID: 31258549
[TBL] [Abstract][Full Text] [Related]
2. L1000CDS
Duan Q; Reid SP; Clark NR; Wang Z; Fernandez NF; Rouillard AD; Readhead B; Tritsch SR; Hodos R; Hafner M; Niepel M; Sorger PK; Dudley JT; Bavari S; Panchal RG; Ma'ayan A
NPJ Syst Biol Appl; 2016; 2():16015-. PubMed ID: 28413689
[TBL] [Abstract][Full Text] [Related]
3. LINCS Canvas Browser: interactive web app to query, browse and interrogate LINCS L1000 gene expression signatures.
Duan Q; Flynn C; Niepel M; Hafner M; Muhlich JL; Fernandez NF; Rouillard AD; Tan CM; Chen EY; Golub TR; Sorger PK; Subramanian A; Ma'ayan A
Nucleic Acids Res; 2014 Jul; 42(Web Server issue):W449-60. PubMed ID: 24906883
[TBL] [Abstract][Full Text] [Related]
4. DOSE-L1000: unveiling the intricate landscape of compound-induced transcriptional changes.
Wang J; Novick S
Bioinformatics; 2023 Nov; 39(11):. PubMed ID: 37952162
[TBL] [Abstract][Full Text] [Related]
5. Compound signature detection on LINCS L1000 big data.
Liu C; Su J; Yang F; Wei K; Ma J; Zhou X
Mol Biosyst; 2015 Mar; 11(3):714-22. PubMed ID: 25609570
[TBL] [Abstract][Full Text] [Related]
6. l1kdeconv: an R package for peak calling analysis with LINCS L1000 data.
Li Z; Li J; Yu P
BMC Bioinformatics; 2017 Jul; 18(1):356. PubMed ID: 28750623
[TBL] [Abstract][Full Text] [Related]
7. Getting Started with LINCS Datasets and Tools.
Xie Z; Kropiwnicki E; Wojciechowicz ML; Jagodnik KM; Shu I; Bailey A; Clarke DJB; Jeon M; Evangelista JE; V Kuleshov M; Lachmann A; Parigi AA; Sanchez JM; Jenkins SL; Ma'ayan A
Curr Protoc; 2022 Jul; 2(7):e487. PubMed ID: 35876555
[TBL] [Abstract][Full Text] [Related]
8. Microbiome Search Engine 2: a Platform for Taxonomic and Functional Search of Global Microbiomes on the Whole-Microbiome Level.
Jing G; Liu L; Wang Z; Zhang Y; Qian L; Gao C; Zhang M; Li M; Zhang Z; Liu X; Xu J; Su X
mSystems; 2021 Jan; 6(1):. PubMed ID: 33468706
[TBL] [Abstract][Full Text] [Related]
9. SigCom LINCS: data and metadata search engine for a million gene expression signatures.
Evangelista JE; Clarke DJB; Xie Z; Lachmann A; Jeon M; Chen K; Jagodnik KM; Jenkins SL; Kuleshov MV; Wojciechowicz ML; Schürer SC; Medvedovic M; Ma'ayan A
Nucleic Acids Res; 2022 Jul; 50(W1):W697-W709. PubMed ID: 35524556
[TBL] [Abstract][Full Text] [Related]
10. A Bayesian approach to accurate and robust signature detection on LINCS L1000 data.
Qiu Y; Lu T; Lim H; Xie L
Bioinformatics; 2020 May; 36(9):2787-2795. PubMed ID: 32003771
[TBL] [Abstract][Full Text] [Related]
11. Transforming L1000 profiles to RNA-seq-like profiles with deep learning.
Jeon M; Xie Z; Evangelista JE; Wojciechowicz ML; Clarke DJB; Ma'ayan A
BMC Bioinformatics; 2022 Sep; 23(1):374. PubMed ID: 36100892
[TBL] [Abstract][Full Text] [Related]
12. LINCS L1000 dataset-based repositioning of CGP-60474 as a highly potent anti-endotoxemic agent.
Han HW; Hahn S; Jeong HY; Jee JH; Nam MO; Kim HK; Lee DH; Lee SY; Choi DK; Yu JH; Min SH; Yoo J
Sci Rep; 2018 Oct; 8(1):14969. PubMed ID: 30297806
[TBL] [Abstract][Full Text] [Related]
13. Drug-induced adverse events prediction with the LINCS L1000 data.
Wang Z; Clark NR; Ma'ayan A
Bioinformatics; 2016 Aug; 32(15):2338-45. PubMed ID: 27153606
[TBL] [Abstract][Full Text] [Related]
14. Drug Signature Detection Based on L1000 Genomic and Proteomic Big Data.
Chen W; Zhou X
Methods Mol Biol; 2019; 1939():273-286. PubMed ID: 30848467
[TBL] [Abstract][Full Text] [Related]
15. BIOMedical Search Engine Framework: Lightweight and customized implementation of domain-specific biomedical search engines.
Jácome AG; Fdez-Riverola F; Lourenço A
Comput Methods Programs Biomed; 2016 Jul; 131():63-77. PubMed ID: 27265049
[TBL] [Abstract][Full Text] [Related]
16. Streamlined analysis of LINCS L1000 data with the slinky package for R.
Kort EJ; Jovinge S
Bioinformatics; 2019 Sep; 35(17):3176-3177. PubMed ID: 30629124
[TBL] [Abstract][Full Text] [Related]
17. PIA: An Intuitive Protein Inference Engine with a Web-Based User Interface.
Uszkoreit J; Maerkens A; Perez-Riverol Y; Meyer HE; Marcus K; Stephan C; Kohlbacher O; Eisenacher M
J Proteome Res; 2015 Jul; 14(7):2988-97. PubMed ID: 25938255
[TBL] [Abstract][Full Text] [Related]
18. [Prediction of drug-induced cell viability by SAE-XGBoost algorithm based on LINCS-L1000 perturbation signal].
Lu J; Chen M; Qin Y; Yu X
Sheng Wu Gong Cheng Xue Bao; 2021 Apr; 37(4):1346-1359. PubMed ID: 33973447
[TBL] [Abstract][Full Text] [Related]
19. Systems Pharmacogenomic Landscape of Drug Similarities from LINCS data: Drug Association Networks.
Musa A; Tripathi S; Dehmer M; Yli-Harja O; Kauffman SA; Emmert-Streib F
Sci Rep; 2019 May; 9(1):7849. PubMed ID: 31127155
[TBL] [Abstract][Full Text] [Related]
20. OpenMX Viewer: A web-based crystalline and molecular graphical user interface program.
Lee YT; Ozaki T
J Mol Graph Model; 2019 Jun; 89():192-198. PubMed ID: 30908996
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
