BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

164 related articles for article (PubMed ID: 31263873)

  • 1. Inference of differential gene regulatory networks based on gene expression and genetic perturbation data.
    Zhou X; Cai X
    Bioinformatics; 2020 Jan; 36(1):197-204. PubMed ID: 31263873
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Bayesian differential analysis of gene regulatory networks exploiting genetic perturbations.
    Li Y; Liu D; Li T; Zhu Y
    BMC Bioinformatics; 2020 Jan; 21(1):12. PubMed ID: 31918656
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Joint eQTL mapping and inference of gene regulatory network improves power of detecting both cis- and trans-eQTLs.
    Zhou X; Cai X
    Bioinformatics; 2021 Dec; 38(1):149-156. PubMed ID: 34487140
    [TBL] [Abstract][Full Text] [Related]  

  • 4. MICRAT: a novel algorithm for inferring gene regulatory networks using time series gene expression data.
    Yang B; Xu Y; Maxwell A; Koh W; Gong P; Zhang C
    BMC Syst Biol; 2018 Dec; 12(Suppl 7):115. PubMed ID: 30547796
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Inference of gene regulatory networks based on nonlinear ordinary differential equations.
    Ma B; Fang M; Jiao X
    Bioinformatics; 2020 Dec; 36(19):4885-4893. PubMed ID: 31950997
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Periodic synchronization of isolated network elements facilitates simulating and inferring gene regulatory networks including stochastic molecular kinetics.
    Hettich J; Gebhardt JCM
    BMC Bioinformatics; 2022 Jan; 23(1):13. PubMed ID: 34986805
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Efficient proximal gradient algorithm for inference of differential gene networks.
    Wang C; Gao F; Giannakis GB; D'Urso G; Cai X
    BMC Bioinformatics; 2019 May; 20(1):224. PubMed ID: 31046666
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Inferring gene regulatory networks by singular value decomposition and gravitation field algorithm.
    Zheng M; Wu JN; Huang YX; Liu GX; Zhou Y; Zhou CG
    PLoS One; 2012; 7(12):e51141. PubMed ID: 23226565
    [TBL] [Abstract][Full Text] [Related]  

  • 9. PoLoBag: Polynomial Lasso Bagging for signed gene regulatory network inference from expression data.
    Ghosh Roy G; Geard N; Verspoor K; He S
    Bioinformatics; 2021 Jan; 36(21):5187-5193. PubMed ID: 32697830
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Reconstructing Genetic Regulatory Networks Using Two-Step Algorithms with the Differential Equation Models of Neural Networks.
    Chen CK
    Interdiscip Sci; 2018 Dec; 10(4):823-835. PubMed ID: 28748400
    [TBL] [Abstract][Full Text] [Related]  

  • 11. CLARIFY: cell-cell interaction and gene regulatory network refinement from spatially resolved transcriptomics.
    Bafna M; Li H; Zhang X
    Bioinformatics; 2023 Jun; 39(39 Suppl 1):i484-i493. PubMed ID: 37387180
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Demographic confounders distort inference of gene regulatory and gene co-expression networks in cancer.
    Ketteler A; Blumenthal DB
    Brief Bioinform; 2023 Sep; 24(6):. PubMed ID: 37985453
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Inferring orthologous gene regulatory networks using interspecies data fusion.
    Penfold CA; Millar JB; Wild DL
    Bioinformatics; 2015 Jun; 31(12):i97-105. PubMed ID: 26072515
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A gene regulatory network inference model based on pseudo-siamese network.
    Wang Q; Guo M; Chen J; Duan R
    BMC Bioinformatics; 2023 Apr; 24(1):163. PubMed ID: 37085776
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Inference of gene networks from gene expression time series using recurrent neural networks and sparse MAP estimation.
    Chen CK
    J Bioinform Comput Biol; 2018 Aug; 16(4):1850009. PubMed ID: 30051742
    [TBL] [Abstract][Full Text] [Related]  

  • 16. JRmGRN: joint reconstruction of multiple gene regulatory networks with common hub genes using data from multiple tissues or conditions.
    Deng W; Zhang K; Liu S; Zhao PX; Xu S; Wei H
    Bioinformatics; 2018 Oct; 34(20):3470-3478. PubMed ID: 29718177
    [TBL] [Abstract][Full Text] [Related]  

  • 17. GNET2: an R package for constructing gene regulatory networks from transcriptomic data.
    Chen C; Hou J; Shi X; Yang H; Birchler JA; Cheng J
    Bioinformatics; 2021 Aug; 37(14):2068-2069. PubMed ID: 33270838
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Inference of gene regulatory networks with sparse structural equation models exploiting genetic perturbations.
    Cai X; Bazerque JA; Giannakis GB
    PLoS Comput Biol; 2013; 9(5):e1003068. PubMed ID: 23717196
    [TBL] [Abstract][Full Text] [Related]  

  • 19. AGRN: accurate gene regulatory network inference using ensemble machine learning methods.
    Alawad DM; Katebi A; Kabir MWU; Hoque MT
    Bioinform Adv; 2023; 3(1):vbad032. PubMed ID: 37038446
    [TBL] [Abstract][Full Text] [Related]  

  • 20. LogBTF: gene regulatory network inference using Boolean threshold network model from single-cell gene expression data.
    Li L; Sun L; Chen G; Wong CW; Ching WK; Liu ZP
    Bioinformatics; 2023 May; 39(5):. PubMed ID: 37079737
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.