These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

167 related articles for article (PubMed ID: 31267126)

  • 1. A survey on identification and quantification of alternative polyadenylation sites from RNA-seq data.
    Chen M; Ji G; Fu H; Lin Q; Ye C; Ye W; Su Y; Wu X
    Brief Bioinform; 2020 Jul; 21(4):1261-1276. PubMed ID: 31267126
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A Survey on Methods for Predicting Polyadenylation Sites from DNA Sequences, Bulk RNA-seq, and Single-cell RNA-seq.
    Ye W; Lian Q; Ye C; Wu X
    Genomics Proteomics Bioinformatics; 2023 Feb; 21(1):67-83. PubMed ID: 36167284
    [TBL] [Abstract][Full Text] [Related]  

  • 3. APAtrap: identification and quantification of alternative polyadenylation sites from RNA-seq data.
    Ye C; Long Y; Ji G; Li QQ; Wu X
    Bioinformatics; 2018 Jun; 34(11):1841-1849. PubMed ID: 29360928
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Benchmarking sequencing methods and tools that facilitate the study of alternative polyadenylation.
    Shah A; Mittleman BE; Gilad Y; Li YI
    Genome Biol; 2021 Oct; 22(1):291. PubMed ID: 34649612
    [TBL] [Abstract][Full Text] [Related]  

  • 5. APA-Scan: detection and visualization of 3'-UTR alternative polyadenylation with RNA-seq and 3'-end-seq data.
    Fahmi NA; Ahmed KT; Chang JW; Nassereddeen H; Fan D; Yong J; Zhang W
    BMC Bioinformatics; 2022 Sep; 23(Suppl 3):396. PubMed ID: 36171568
    [TBL] [Abstract][Full Text] [Related]  

  • 6. TAPAS: tool for alternative polyadenylation site analysis.
    Arefeen A; Liu J; Xiao X; Jiang T
    Bioinformatics; 2018 Aug; 34(15):2521-2529. PubMed ID: 30052912
    [TBL] [Abstract][Full Text] [Related]  

  • 7. scAPAmod: Profiling Alternative Polyadenylation Modalities in Single Cells from Single-Cell RNA-Seq Data.
    Qian L; Fu H; Mou Y; Lin W; Ye L; Ji G
    Int J Mol Sci; 2022 Jul; 23(15):. PubMed ID: 35897701
    [TBL] [Abstract][Full Text] [Related]  

  • 8. scAPAtrap: identification and quantification of alternative polyadenylation sites from single-cell RNA-seq data.
    Wu X; Liu T; Ye C; Ye W; Ji G
    Brief Bioinform; 2021 Jul; 22(4):. PubMed ID: 33142319
    [TBL] [Abstract][Full Text] [Related]  

  • 9. QAPA: a new method for the systematic analysis of alternative polyadenylation from RNA-seq data.
    Ha KCH; Blencowe BJ; Morris Q
    Genome Biol; 2018 Mar; 19(1):45. PubMed ID: 29592814
    [TBL] [Abstract][Full Text] [Related]  

  • 10. scDAPA: detection and visualization of dynamic alternative polyadenylation from single cell RNA-seq data.
    Ye C; Zhou Q; Wu X; Yu C; Ji G; Saban DR; Li QQ
    Bioinformatics; 2020 Feb; 36(4):1262-1264. PubMed ID: 31557285
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Alternative polyadenylation analysis in animals and plants: newly developed strategies for profiling, processing and validation.
    Zhang Y; Carrion SA; Zhang Y; Zhang X; Zinski AL; Michal JJ; Jiang Z
    Int J Biol Sci; 2018; 14(12):1709-1714. PubMed ID: 30416385
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Complex and dynamic landscape of RNA polyadenylation revealed by PAS-Seq.
    Shepard PJ; Choi EA; Lu J; Flanagan LA; Hertel KJ; Shi Y
    RNA; 2011 Apr; 17(4):761-72. PubMed ID: 21343387
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Dynamic expression of 3' UTRs revealed by Poisson hidden Markov modeling of RNA-Seq: implications in gene expression profiling.
    Lu J; Bushel PR
    Gene; 2013 Sep; 527(2):616-23. PubMed ID: 23845781
    [TBL] [Abstract][Full Text] [Related]  

  • 14. scAPAdb: a comprehensive database of alternative polyadenylation at single-cell resolution.
    Zhu S; Lian Q; Ye W; Qin W; Wu Z; Ji G; Wu X
    Nucleic Acids Res; 2022 Jan; 50(D1):D365-D370. PubMed ID: 34508354
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Cell-type-specific analysis of alternative polyadenylation using single-cell transcriptomics data.
    Shulman ED; Elkon R
    Nucleic Acids Res; 2019 Nov; 47(19):10027-10039. PubMed ID: 31501864
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Computational analysis of alternative polyadenylation from standard RNA-seq and single-cell RNA-seq data.
    Gao Y; Li W
    Methods Enzymol; 2021; 655():225-243. PubMed ID: 34183123
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Distinct polyadenylation landscapes of diverse human tissues revealed by a modified PA-seq strategy.
    Ni T; Yang Y; Hafez D; Yang W; Kiesewetter K; Wakabayashi Y; Ohler U; Peng W; Zhu J
    BMC Genomics; 2013 Sep; 14():615. PubMed ID: 24025092
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Analysis of alternative polyadenylation from single-cell RNA-seq using scDaPars reveals cell subpopulations invisible to gene expression.
    Gao Y; Li L; Amos CI; Li W
    Genome Res; 2021 Oct; 31(10):1856-1866. PubMed ID: 34035046
    [TBL] [Abstract][Full Text] [Related]  

  • 19. stAPAminer: Mining Spatial Patterns of Alternative Polyadenylation for Spatially Resolved Transcriptomic Studies.
    Ji G; Tang Q; Zhu S; Zhu J; Ye P; Xia S; Wu X
    Genomics Proteomics Bioinformatics; 2023 Jun; 21(3):601-618. PubMed ID: 36669641
    [TBL] [Abstract][Full Text] [Related]  

  • 20. scMAPA: Identification of cell-type-specific alternative polyadenylation in complex tissues.
    Bai Y; Qin Y; Fan Z; Morrison RM; Nam K; Zarour HM; Koldamova R; Padiath QS; Kim S; Park HJ
    Gigascience; 2022 Apr; 11():. PubMed ID: 35488860
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.