169 related articles for article (PubMed ID: 31267744)
1. Prediction of an Upper Limit for the Fraction of Interprotein Cross-Links in Large-Scale In Vivo Cross-Linking Studies.
Keller A; Chavez JD; Felt KC; Bruce JE
J Proteome Res; 2019 Aug; 18(8):3077-3085. PubMed ID: 31267744
[TBL] [Abstract][Full Text] [Related]
2. Cross-linking Mass Spectrometry Analysis of the Yeast Nucleus Reveals Extensive Protein-Protein Interactions Not Detected by Systematic Two-Hybrid or Affinity Purification-Mass Spectrometry.
Bartolec TK; Smith DL; Pang CNI; Xu YD; Hamey JJ; Wilkins MR
Anal Chem; 2020 Jan; 92(2):1874-1882. PubMed ID: 31851481
[No Abstract] [Full Text] [Related]
3. Leveraging the Entirety of the Protein Data Bank to Enable Improved Structure Prediction Based on Cross-Link Data.
Keller A; Chavez JD; Tang X; Bruce JE
J Proteome Res; 2021 Jan; 20(1):1087-1095. PubMed ID: 33263396
[TBL] [Abstract][Full Text] [Related]
4. Matching cross-linked peptide spectra: only as good as the worse identification.
Trnka MJ; Baker PR; Robinson PJ; Burlingame AL; Chalkley RJ
Mol Cell Proteomics; 2014 Feb; 13(2):420-34. PubMed ID: 24335475
[TBL] [Abstract][Full Text] [Related]
5. Structural probing of a protein phosphatase 2A network by chemical cross-linking and mass spectrometry.
Herzog F; Kahraman A; Boehringer D; Mak R; Bracher A; Walzthoeni T; Leitner A; Beck M; Hartl FU; Ban N; Malmström L; Aebersold R
Science; 2012 Sep; 337(6100):1348-52. PubMed ID: 22984071
[TBL] [Abstract][Full Text] [Related]
6. Improved Interpretation of Protein Conformational Differences and Ligand Occupancy in Large-Scale Cross-Link Data.
Keller A; Bakhtina AA; Chavez JD; Bruce JE
J Proteome Res; 2022 Jun; 21(6):1475-1484. PubMed ID: 35594376
[TBL] [Abstract][Full Text] [Related]
7. MaXLinker: Proteome-wide Cross-link Identifications with High Specificity and Sensitivity.
Yugandhar K; Wang TY; Leung AK; Lanz MC; Motorykin I; Liang J; Shayhidin EE; Smolka MB; Zhang S; Yu H
Mol Cell Proteomics; 2020 Mar; 19(3):554-568. PubMed ID: 31839598
[TBL] [Abstract][Full Text] [Related]
8. Proteome-wide profiling of protein assemblies by cross-linking mass spectrometry.
Liu F; Rijkers DT; Post H; Heck AJ
Nat Methods; 2015 Dec; 12(12):1179-84. PubMed ID: 26414014
[TBL] [Abstract][Full Text] [Related]
9. Molecular Details Underlying Dynamic Structures and Regulation of the Human 26S Proteasome.
Wang X; Cimermancic P; Yu C; Schweitzer A; Chopra N; Engel JL; Greenberg C; Huszagh AS; Beck F; Sakata E; Yang Y; Novitsky EJ; Leitner A; Nanni P; Kahraman A; Guo X; Dixon JE; Rychnovsky SD; Aebersold R; Baumeister W; Sali A; Huang L
Mol Cell Proteomics; 2017 May; 16(5):840-854. PubMed ID: 28292943
[TBL] [Abstract][Full Text] [Related]
10. In-Culture Cross-Linking of Bacterial Cells Reveals Large-Scale Dynamic Protein-Protein Interactions at the Peptide Level.
de Jong L; de Koning EA; Roseboom W; Buncherd H; Wanner MJ; Dapic I; Jansen PJ; van Maarseveen JH; Corthals GL; Lewis PJ; Hamoen LW; de Koster CG
J Proteome Res; 2017 Jul; 16(7):2457-2471. PubMed ID: 28516784
[TBL] [Abstract][Full Text] [Related]
11. Development of in Planta Chemical Cross-Linking-Based Quantitative Interactomics in Arabidopsis.
Liu S; Yu F; Hu Q; Wang T; Yu L; Du S; Yu W; Li N
J Proteome Res; 2018 Sep; 17(9):3195-3213. PubMed ID: 30084631
[TBL] [Abstract][Full Text] [Related]
12. A gas phase cleavage reaction of cross-linked peptides for protein complex topology studies by peptide fragment fingerprinting from large sequence database.
Buncherd H; Roseboom W; de Koning LJ; de Koster CG; de Jong L
J Proteomics; 2014 Aug; 108():65-77. PubMed ID: 24840472
[TBL] [Abstract][Full Text] [Related]
13. Characterization of the Interaction between Arginine Methyltransferase Hmt1 and Its Substrate Npl3: Use of Multiple Cross-Linkers, Mass Spectrometric Approaches, and Software Platforms.
Smith DL; Götze M; Bartolec TK; Hart-Smith G; Wilkins MR
Anal Chem; 2018 Aug; 90(15):9101-9108. PubMed ID: 30004689
[TBL] [Abstract][Full Text] [Related]
14. CLMSVault: A Software Suite for Protein Cross-Linking Mass-Spectrometry Data Analysis and Visualization.
Courcelles M; Coulombe-Huntington J; Cossette É; Gingras AC; Thibault P; Tyers M
J Proteome Res; 2017 Jul; 16(7):2645-2652. PubMed ID: 28537071
[TBL] [Abstract][Full Text] [Related]
15. Isolation of cross-linked peptides by diagonal strong cation exchange chromatography for protein complex topology studies by peptide fragment fingerprinting from large sequence databases.
Buncherd H; Roseboom W; Ghavim B; Du W; de Koning LJ; de Koster CG; de Jong L
J Chromatogr A; 2014 Jun; 1348():34-46. PubMed ID: 24819016
[TBL] [Abstract][Full Text] [Related]
16. Divide and conquer: cleavable cross-linkers to study protein conformation and protein-protein interactions.
Sinz A
Anal Bioanal Chem; 2017 Jan; 409(1):33-44. PubMed ID: 27734140
[TBL] [Abstract][Full Text] [Related]
17. A Simple Cross-Linking/Mass Spectrometry Workflow for Studying System-wide Protein Interactions.
Götze M; Iacobucci C; Ihling CH; Sinz A
Anal Chem; 2019 Aug; 91(15):10236-10244. PubMed ID: 31283178
[TBL] [Abstract][Full Text] [Related]
18. A new cross-linking strategy: protein interaction reporter (PIR) technology for protein-protein interaction studies.
Tang X; Bruce JE
Mol Biosyst; 2010 Jun; 6(6):939-47. PubMed ID: 20485738
[TBL] [Abstract][Full Text] [Related]
19. Towards low false discovery rate estimation for protein-protein interactions detected by chemical cross-linking.
de Jong L; Roseboom W; Kramer G
Biochim Biophys Acta Proteins Proteom; 2021 Jul; 1869(7):140655. PubMed ID: 33812047
[TBL] [Abstract][Full Text] [Related]
20. Chemical cross-linking and mass spectrometry to determine the subunit interaction network in a recombinant human SAGA HAT subcomplex.
Nguyen-Huynh NT; Sharov G; Potel C; Fichter P; Trowitzsch S; Berger I; Lamour V; Schultz P; Potier N; Leize-Wagner E
Protein Sci; 2015 Aug; 24(8):1232-46. PubMed ID: 25753033
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
