98 related articles for article (PubMed ID: 31287494)
1. Look4TRs: a de novo tool for detecting simple tandem repeats using self-supervised hidden Markov models.
Velasco A; James BT; Wells VD; Girgis HZ
Bioinformatics; 2020 Jan; 36(2):380-387. PubMed ID: 31287494
[TBL] [Abstract][Full Text] [Related]
2. Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale.
Girgis HZ
BMC Bioinformatics; 2015 Jul; 16():227. PubMed ID: 26206263
[TBL] [Abstract][Full Text] [Related]
3. MsDetector: toward a standard computational tool for DNA microsatellites detection.
Girgis HZ; Sheetlin SL
Nucleic Acids Res; 2013 Jan; 41(1):e22. PubMed ID: 23034809
[TBL] [Abstract][Full Text] [Related]
4. Krait: an ultrafast tool for genome-wide survey of microsatellites and primer design.
Du L; Zhang C; Liu Q; Zhang X; Yue B; Hancock J
Bioinformatics; 2018 Feb; 34(4):681-683. PubMed ID: 29048524
[TBL] [Abstract][Full Text] [Related]
5. PERF: an exhaustive algorithm for ultra-fast and efficient identification of microsatellites from large DNA sequences.
Avvaru AK; Sowpati DT; Mishra RK
Bioinformatics; 2018 Mar; 34(6):943-948. PubMed ID: 29121165
[TBL] [Abstract][Full Text] [Related]
6. DeepTE: a computational method for de novo classification of transposons with convolutional neural network.
Yan H; Bombarely A; Li S
Bioinformatics; 2020 Aug; 36(15):4269-4275. PubMed ID: 32415954
[TBL] [Abstract][Full Text] [Related]
7. PRAP: an ab initio software package for automated genome-wide analysis of DNA repeats for prokaryotes.
Chen GL; Chang YJ; Hsueh CH
Bioinformatics; 2013 Nov; 29(21):2683-9. PubMed ID: 23958725
[TBL] [Abstract][Full Text] [Related]
8. GATK PathSeq: a customizable computational tool for the discovery and identification of microbial sequences in libraries from eukaryotic hosts.
Walker MA; Pedamallu CS; Ojesina AI; Bullman S; Sharpe T; Whelan CW; Meyerson M
Bioinformatics; 2018 Dec; 34(24):4287-4289. PubMed ID: 29982281
[TBL] [Abstract][Full Text] [Related]
9. phRAIDER: Pattern-Hunter based Rapid Ab Initio Detection of Elementary Repeats.
Schaeffer CE; Figueroa ND; Liu X; Karro JE
Bioinformatics; 2016 Jun; 32(12):i209-i215. PubMed ID: 27307619
[TBL] [Abstract][Full Text] [Related]
10. BCFtools/RoH: a hidden Markov model approach for detecting autozygosity from next-generation sequencing data.
Narasimhan V; Danecek P; Scally A; Xue Y; Tyler-Smith C; Durbin R
Bioinformatics; 2016 Jun; 32(11):1749-51. PubMed ID: 26826718
[TBL] [Abstract][Full Text] [Related]
11. Dot2dot: accurate whole-genome tandem repeats discovery.
Genovese LM; Mosca MM; Pellegrini M; Geraci F
Bioinformatics; 2019 Mar; 35(6):914-922. PubMed ID: 30165507
[TBL] [Abstract][Full Text] [Related]
12. FactorialHMM: fast and exact inference in factorial hidden Markov models.
Schweiger R; Erlich Y; Carmi S
Bioinformatics; 2019 Jun; 35(12):2162-2164. PubMed ID: 30445428
[TBL] [Abstract][Full Text] [Related]
13. MISA-web: a web server for microsatellite prediction.
Beier S; Thiel T; Münch T; Scholz U; Mascher M
Bioinformatics; 2017 Aug; 33(16):2583-2585. PubMed ID: 28398459
[TBL] [Abstract][Full Text] [Related]
14. digIS: towards detecting distant and putative novel insertion sequence elements in prokaryotic genomes.
Puterová J; Martínek T
BMC Bioinformatics; 2021 May; 22(1):258. PubMed ID: 34016050
[TBL] [Abstract][Full Text] [Related]
15. GeneNoteBook, a collaborative notebook for comparative genomics.
Holmer R; van Velzen R; Geurts R; Bisseling T; de Ridder D; Smit S
Bioinformatics; 2019 Nov; 35(22):4779-4781. PubMed ID: 31199463
[TBL] [Abstract][Full Text] [Related]
16. A profile-based method for identifying functional divergence of orthologous genes in bacterial genomes.
Wheeler NE; Barquist L; Kingsley RA; Gardner PP
Bioinformatics; 2016 Dec; 32(23):3566-3574. PubMed ID: 27503221
[TBL] [Abstract][Full Text] [Related]
17. Survey of compound microsatellites in multiple Lactobacillus genomes.
Basharat Z; Yasmin A
Can J Microbiol; 2015 Dec; 61(12):898-902. PubMed ID: 26445296
[TBL] [Abstract][Full Text] [Related]
18. RAMPART: a workflow management system for de novo genome assembly.
Mapleson D; Drou N; Swarbreck D
Bioinformatics; 2015 Jun; 31(11):1824-6. PubMed ID: 25637556
[TBL] [Abstract][Full Text] [Related]
19. GToTree: a user-friendly workflow for phylogenomics.
Lee MD
Bioinformatics; 2019 Oct; 35(20):4162-4164. PubMed ID: 30865266
[TBL] [Abstract][Full Text] [Related]
20. IMEx: Imperfect Microsatellite Extractor.
Mudunuri SB; Nagarajaram HA
Bioinformatics; 2007 May; 23(10):1181-7. PubMed ID: 17379689
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]