411 related articles for article (PubMed ID: 31296857)
1. Strain-level metagenomic assignment and compositional estimation for long reads with MetaMaps.
Dilthey AT; Jain C; Koren S; Phillippy AM
Nat Commun; 2019 Jul; 10(1):3066. PubMed ID: 31296857
[TBL] [Abstract][Full Text] [Related]
2. A comprehensive investigation of metagenome assembly by linked-read sequencing.
Zhang L; Fang X; Liao H; Zhang Z; Zhou X; Han L; Chen Y; Qiu Q; Li SC
Microbiome; 2020 Nov; 8(1):156. PubMed ID: 33176883
[TBL] [Abstract][Full Text] [Related]
3. MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach.
Brown BL; Watson M; Minot SS; Rivera MC; Franklin RB
Gigascience; 2017 Mar; 6(3):1-10. PubMed ID: 28327976
[TBL] [Abstract][Full Text] [Related]
4. Assessment of metagenomic assemblers based on hybrid reads of real and simulated metagenomic sequences.
Wang Z; Wang Y; Fuhrman JA; Sun F; Zhu S
Brief Bioinform; 2020 May; 21(3):777-790. PubMed ID: 30860572
[TBL] [Abstract][Full Text] [Related]
5. Exploiting topic modeling to boost metagenomic reads binning.
Zhang R; Cheng Z; Guan J; Zhou S
BMC Bioinformatics; 2015; 16 Suppl 5(Suppl 5):S2. PubMed ID: 25859745
[TBL] [Abstract][Full Text] [Related]
6. Species classifier choice is a key consideration when analysing low-complexity food microbiome data.
Walsh AM; Crispie F; O'Sullivan O; Finnegan L; Claesson MJ; Cotter PD
Microbiome; 2018 Mar; 6(1):50. PubMed ID: 29554948
[TBL] [Abstract][Full Text] [Related]
7. Fast and simple protein-alignment-guided assembly of orthologous gene families from microbiome sequencing reads.
Huson DH; Tappu R; Bazinet AL; Xie C; Cummings MP; Nieselt K; Williams R
Microbiome; 2017 Jan; 5(1):11. PubMed ID: 28122610
[TBL] [Abstract][Full Text] [Related]
8. A statistical framework for accurate taxonomic assignment of metagenomic sequencing reads.
Jiang H; An L; Lin SM; Feng G; Qiu Y
PLoS One; 2012; 7(10):e46450. PubMed ID: 23049702
[TBL] [Abstract][Full Text] [Related]
9. Unveiling microbial diversity: harnessing long-read sequencing technology.
Agustinho DP; Fu Y; Menon VK; Metcalf GA; Treangen TJ; Sedlazeck FJ
Nat Methods; 2024 Jun; 21(6):954-966. PubMed ID: 38689099
[TBL] [Abstract][Full Text] [Related]
10. Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets.
Portik DM; Brown CT; Pierce-Ward NT
BMC Bioinformatics; 2022 Dec; 23(1):541. PubMed ID: 36513983
[TBL] [Abstract][Full Text] [Related]
11. RIEMS: a software pipeline for sensitive and comprehensive taxonomic classification of reads from metagenomics datasets.
Scheuch M; Höper D; Beer M
BMC Bioinformatics; 2015 Mar; 16(1):69. PubMed ID: 25886935
[TBL] [Abstract][Full Text] [Related]
12. Re-purposing software for functional characterization of the microbiome.
Gardiner LJ; Haiminen N; Utro F; Parida L; Seabolt E; Krishna R; Kaufman JH
Microbiome; 2021 Jan; 9(1):4. PubMed ID: 33422152
[TBL] [Abstract][Full Text] [Related]
13. ClassGraph: Improving Metagenomic Read Classification with Overlap Graphs.
Cavattoni M; Comin M
J Comput Biol; 2023 Jun; 30(6):633-647. PubMed ID: 37023405
[TBL] [Abstract][Full Text] [Related]
14. Generation and application of pseudo-long reads for metagenome assembly.
Sim M; Lee J; Wy S; Park N; Lee D; Kwon D; Kim J
Gigascience; 2022 May; 11():. PubMed ID: 35579554
[TBL] [Abstract][Full Text] [Related]
15. Sketching and sampling approaches for fast and accurate long read classification.
Das A; Schatz MC
BMC Bioinformatics; 2022 Oct; 23(1):452. PubMed ID: 36316646
[TBL] [Abstract][Full Text] [Related]
16. Microbial community analysis using high-throughput sequencing technology: a beginner's guide for microbiologists.
Jo J; Oh J; Park C
J Microbiol; 2020 Mar; 58(3):176-192. PubMed ID: 32108314
[TBL] [Abstract][Full Text] [Related]
17. Rhometa: Population recombination rate estimation from metagenomic read datasets.
Krishnan S; DeMaere MZ; Beck D; Ostrowski M; Seymour JR; Darling AE
PLoS Genet; 2023 Mar; 19(3):e1010683. PubMed ID: 36972309
[TBL] [Abstract][Full Text] [Related]
18. Intestinal microbiota domination under extreme selective pressures characterized by metagenomic read cloud sequencing and assembly.
Kang JB; Siranosian BA; Moss EL; Banaei N; Andermann TM; Bhatt AS
BMC Bioinformatics; 2019 Dec; 20(Suppl 16):585. PubMed ID: 31787070
[TBL] [Abstract][Full Text] [Related]
19. MiCoP: microbial community profiling method for detecting viral and fungal organisms in metagenomic samples.
LaPierre N; Mangul S; Alser M; Mandric I; Wu NC; Koslicki D; Eskin E
BMC Genomics; 2019 Jun; 20(Suppl 5):423. PubMed ID: 31167634
[TBL] [Abstract][Full Text] [Related]
20. MEGAN-LR: new algorithms allow accurate binning and easy interactive exploration of metagenomic long reads and contigs.
Huson DH; Albrecht B; Bağcı C; Bessarab I; Górska A; Jolic D; Williams RBH
Biol Direct; 2018 Apr; 13(1):6. PubMed ID: 29678199
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]