These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

130 related articles for article (PubMed ID: 31301554)

  • 1. Aggregation kinetics of short peptides: All-atom and coarse-grained molecular dynamics study.
    Szała B; Molski A
    Biophys Chem; 2019 Oct; 253():106219. PubMed ID: 31301554
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Clustering and Fibril Formation during GNNQQNY Aggregation: A Molecular Dynamics Study.
    Szała-Mendyk B; Molski A
    Biomolecules; 2020 Sep; 10(10):. PubMed ID: 32987720
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Ganglioside-Lipid and Ganglioside-Protein Interactions Revealed by Coarse-Grained and Atomistic Molecular Dynamics Simulations.
    Gu RX; Ingólfsson HI; de Vries AH; Marrink SJ; Tieleman DP
    J Phys Chem B; 2017 Apr; 121(15):3262-3275. PubMed ID: 27610460
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Membrane partitioning of peptide aggregates: coarse-grained molecular dynamics simulations.
    Lien YH; Ram Mahato D; Hoppe-Seyler F; Fischer WB
    J Biomol Struct Dyn; 2020 Feb; 38(2):524-532. PubMed ID: 30774024
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Aggregation of disease-related peptides.
    Nguyen PH; Sterpone F; Derreumaux P
    Prog Mol Biol Transl Sci; 2020; 170():435-460. PubMed ID: 32145950
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Osmolyte Induced Changes in Peptide Conformational Ensemble Correlate with Slower Amyloid Aggregation: A Coarse-Grained Simulation Study.
    Sukenik S; Sapir L; Harries D
    J Chem Theory Comput; 2015 Dec; 11(12):5918-28. PubMed ID: 26587669
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Short Peptide Self-Assembly in the Martini Coarse-Grain Force Field Family.
    van Teijlingen A; Smith MC; Tuttle T
    Acc Chem Res; 2023 Mar; 56(6):644-654. PubMed ID: 36866851
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Temperature dependent aggregation mechanism and pathway of lysozyme: By all atom and coarse grained molecular dynamics simulation.
    Islam S; Shahzadi Z; Mukhopadhyay C
    J Mol Graph Model; 2021 Mar; 103():107816. PubMed ID: 33291026
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Chiral structure fluctuations predicted by a coarse-grained model of peptide aggregation.
    Szała B; Molski A
    Soft Matter; 2020 Jun; 16(21):5071-5080. PubMed ID: 32453328
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Influence of pH and sequence in peptide aggregation via molecular simulation.
    Enciso M; Schütte C; Delle Site L
    J Chem Phys; 2015 Dec; 143(24):243130. PubMed ID: 26723615
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Mixing MARTINI: electrostatic coupling in hybrid atomistic-coarse-grained biomolecular simulations.
    Wassenaar TA; Ingólfsson HI; Priess M; Marrink SJ; Schäfer LV
    J Phys Chem B; 2013 Apr; 117(13):3516-30. PubMed ID: 23406326
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Probing Protein Aggregation Using the Coarse-Grained UNRES Force Field.
    Rojas AV; Maisuradze GG; Scheraga HA; Liwo A
    Methods Mol Biol; 2022; 2340():79-104. PubMed ID: 35167071
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Computer Simulations Aimed at Exploring Protein Aggregation and Dissociation.
    Nguyen PH; Derreumaux P
    Methods Mol Biol; 2022; 2340():175-196. PubMed ID: 35167075
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Molecular events during the early stages of aggregation of GNNQQNY: An all atom MD simulation study of randomly dispersed peptides.
    Srivastava A; Balaji PV
    J Struct Biol; 2015 Dec; 192(3):376-391. PubMed ID: 26433030
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Insights into aggregation dynamics of NACore peptides from coarse-grained simulations.
    Huang RJ; Tang R; Song XY; Wang JH; Chen K; Tian WD
    Proteins; 2023 Jan; 91(1):16-21. PubMed ID: 36514832
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Inhibition of GNNQQNY prion peptide aggregation by trehalose: a mechanistic view.
    Katyal N; Deep S
    Phys Chem Chem Phys; 2017 Jul; 19(29):19120-19138. PubMed ID: 28702592
    [TBL] [Abstract][Full Text] [Related]  

  • 17. β-sheet propensity controls the kinetic pathways and morphologies of seeded peptide aggregation.
    Morriss-Andrews A; Bellesia G; Shea JE
    J Chem Phys; 2012 Oct; 137(14):145104. PubMed ID: 23061868
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Suitability of the MARTINI Force Field for Use with Gas-Phase Protein Complexes.
    Fegan SK; Thachuk M
    J Chem Theory Comput; 2012 Apr; 8(4):1304-13. PubMed ID: 26596747
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Diverse Aggregation Kinetics Predicted by a Coarse-Grained Peptide Model.
    Szała-Mendyk B; Molski A
    J Phys Chem B; 2021 Jul; 125(28):7587-7597. PubMed ID: 34251838
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Sequence dependent aggregation of peptides and fibril formation.
    Hung NB; Le DM; Hoang TX
    J Chem Phys; 2017 Sep; 147(10):105102. PubMed ID: 28915764
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.