These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

231 related articles for article (PubMed ID: 31305886)

  • 41. Polyribosomal RNA-Seq reveals the decreased complexity and diversity of the Arabidopsis translatome.
    Zhang X; Rosen BD; Tang H; Krishnakumar V; Town CD
    PLoS One; 2015; 10(2):e0117699. PubMed ID: 25706651
    [TBL] [Abstract][Full Text] [Related]  

  • 42. BinPacker: Packing-Based De Novo Transcriptome Assembly from RNA-seq Data.
    Liu J; Li G; Chang Z; Yu T; Liu B; McMullen R; Chen P; Huang X
    PLoS Comput Biol; 2016 Feb; 12(2):e1004772. PubMed ID: 26894997
    [TBL] [Abstract][Full Text] [Related]  

  • 43. SpliceSeq: a resource for analysis and visualization of RNA-Seq data on alternative splicing and its functional impacts.
    Ryan MC; Cleland J; Kim R; Wong WC; Weinstein JN
    Bioinformatics; 2012 Sep; 28(18):2385-7. PubMed ID: 22820202
    [TBL] [Abstract][Full Text] [Related]  

  • 44. Exome RNA sequencing reveals rare and novel alternative transcripts.
    Halvardson J; Zaghlool A; Feuk L
    Nucleic Acids Res; 2013 Jan; 41(1):e6. PubMed ID: 22941640
    [TBL] [Abstract][Full Text] [Related]  

  • 45. Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown.
    Pertea M; Kim D; Pertea GM; Leek JT; Salzberg SL
    Nat Protoc; 2016 Sep; 11(9):1650-67. PubMed ID: 27560171
    [TBL] [Abstract][Full Text] [Related]  

  • 46. Characterizing short read sequencing for gene discovery and RNA-Seq analysis in Crassostrea gigas.
    Gavery MR; Roberts SB
    Comp Biochem Physiol Part D Genomics Proteomics; 2012 Jun; 7(2):94-9. PubMed ID: 22244882
    [TBL] [Abstract][Full Text] [Related]  

  • 47. The Alternative Splicing Gallery (ASG): bridging the gap between genome and transcriptome.
    Leipzig J; Pevzner P; Heber S
    Nucleic Acids Res; 2004; 32(13):3977-83. PubMed ID: 15292448
    [TBL] [Abstract][Full Text] [Related]  

  • 48. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation.
    Trapnell C; Williams BA; Pertea G; Mortazavi A; Kwan G; van Baren MJ; Salzberg SL; Wold BJ; Pachter L
    Nat Biotechnol; 2010 May; 28(5):511-5. PubMed ID: 20436464
    [TBL] [Abstract][Full Text] [Related]  

  • 49. Accurate inference of isoforms from multiple sample RNA-Seq data.
    Tasnim M; Ma S; Yang EW; Jiang T; Li W
    BMC Genomics; 2015; 16 Suppl 2(Suppl 2):S15. PubMed ID: 25708199
    [TBL] [Abstract][Full Text] [Related]  

  • 50. SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads.
    Xie Y; Wu G; Tang J; Luo R; Patterson J; Liu S; Huang W; He G; Gu S; Li S; Zhou X; Lam TW; Li Y; Xu X; Wong GK; Wang J
    Bioinformatics; 2014 Jun; 30(12):1660-6. PubMed ID: 24532719
    [TBL] [Abstract][Full Text] [Related]  

  • 51. Alternative Splicing Signatures in RNA-seq Data: Percent Spliced in (PSI).
    Schafer S; Miao K; Benson CC; Heinig M; Cook SA; Hubner N
    Curr Protoc Hum Genet; 2015 Oct; 87():11.16.1-11.16.14. PubMed ID: 26439713
    [TBL] [Abstract][Full Text] [Related]  

  • 52. A long-read RNA-seq approach to identify novel transcripts of very large genes.
    Uapinyoying P; Goecks J; Knoblach SM; Panchapakesan K; Bonnemann CG; Partridge TA; Jaiswal JK; Hoffman EP
    Genome Res; 2020 Jun; 30(6):885-897. PubMed ID: 32660935
    [TBL] [Abstract][Full Text] [Related]  

  • 53. PacBio full-length cDNA sequencing integrated with RNA-seq reads drastically improves the discovery of splicing transcripts in rice.
    Zhang G; Sun M; Wang J; Lei M; Li C; Zhao D; Huang J; Li W; Li S; Li J; Yang J; Luo Y; Hu S; Zhang B
    Plant J; 2019 Jan; 97(2):296-305. PubMed ID: 30288819
    [TBL] [Abstract][Full Text] [Related]  

  • 54. High-resolution transcriptome analysis with long-read RNA sequencing.
    Cho H; Davis J; Li X; Smith KS; Battle A; Montgomery SB
    PLoS One; 2014; 9(9):e108095. PubMed ID: 25251678
    [TBL] [Abstract][Full Text] [Related]  

  • 55. Heuristic pairwise alignment of de Bruijn graphs to facilitate simultaneous transcript discovery in related organisms from RNA-Seq data.
    Fu S; Tarone AM; Sze SH
    BMC Genomics; 2015; 16 Suppl 11(Suppl 11):S5. PubMed ID: 26576690
    [TBL] [Abstract][Full Text] [Related]  

  • 56. Identifying differential alternative splicing events from RNA sequencing data using RNASeq-MATS.
    Park JW; Tokheim C; Shen S; Xing Y
    Methods Mol Biol; 2013; 1038():171-9. PubMed ID: 23872975
    [TBL] [Abstract][Full Text] [Related]  

  • 57. TAP: a targeted clinical genomics pipeline for detecting transcript variants using RNA-seq data.
    Chiu R; Nip KM; Chu J; Birol I
    BMC Med Genomics; 2018 Sep; 11(1):79. PubMed ID: 30200994
    [TBL] [Abstract][Full Text] [Related]  

  • 58. Mapping and quantifying mammalian transcriptomes by RNA-Seq.
    Mortazavi A; Williams BA; McCue K; Schaeffer L; Wold B
    Nat Methods; 2008 Jul; 5(7):621-8. PubMed ID: 18516045
    [TBL] [Abstract][Full Text] [Related]  

  • 59. STAble: a novel approach to de novo assembly of RNA-seq data and its application in a metabolic model network based metatranscriptomic workflow.
    Saggese I; Bona E; Conway M; Favero F; Ladetto M; Liò P; Manzini G; Mignone F
    BMC Bioinformatics; 2018 Jul; 19(Suppl 7):184. PubMed ID: 30066630
    [TBL] [Abstract][Full Text] [Related]  

  • 60. Exact transcript quantification over splice graphs.
    Ma C; Zheng H; Kingsford C
    Algorithms Mol Biol; 2021 May; 16(1):5. PubMed ID: 33971903
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 12.