BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

336 related articles for article (PubMed ID: 31308250)

  • 1. Integration and Analysis of CPTAC Proteomics Data in the Context of Cancer Genomics in the cBioPortal.
    Wu P; Heins ZJ; Muller JT; Katsnelson L; de Bruijn I; Abeshouse AA; Schultz N; Fenyö D; Gao J
    Mol Cell Proteomics; 2019 Sep; 18(9):1893-1898. PubMed ID: 31308250
    [TBL] [Abstract][Full Text] [Related]  

  • 2. LinkedOmics: analyzing multi-omics data within and across 32 cancer types.
    Vasaikar SV; Straub P; Wang J; Zhang B
    Nucleic Acids Res; 2018 Jan; 46(D1):D956-D963. PubMed ID: 29136207
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal.
    Gao J; Aksoy BA; Dogrusoz U; Dresdner G; Gross B; Sumer SO; Sun Y; Jacobsen A; Sinha R; Larsson E; Cerami E; Sander C; Schultz N
    Sci Signal; 2013 Apr; 6(269):pl1. PubMed ID: 23550210
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Integrative Proteo-genomic Analysis to Construct CNA-protein Regulatory Map in Breast and Ovarian Tumors.
    Ma W; Chen LS; Özbek U; Han SW; Lin C; Paulovich AG; Zhong H; Wang P
    Mol Cell Proteomics; 2019 Aug; 18(8 suppl 1):S66-S81. PubMed ID: 31281117
    [TBL] [Abstract][Full Text] [Related]  

  • 5. TCGA-assembler 2: software pipeline for retrieval and processing of TCGA/CPTAC data.
    Wei L; Jin Z; Yang S; Xu Y; Zhu Y; Ji Y
    Bioinformatics; 2018 May; 34(9):1615-1617. PubMed ID: 29272348
    [TBL] [Abstract][Full Text] [Related]  

  • 6. The CPTAC Data Portal: A Resource for Cancer Proteomics Research.
    Edwards NJ; Oberti M; Thangudu RR; Cai S; McGarvey PB; Jacob S; Madhavan S; Ketchum KA
    J Proteome Res; 2015 Jun; 14(6):2707-13. PubMed ID: 25873244
    [TBL] [Abstract][Full Text] [Related]  

  • 7. UALCAN: An update to the integrated cancer data analysis platform.
    Chandrashekar DS; Karthikeyan SK; Korla PK; Patel H; Shovon AR; Athar M; Netto GJ; Qin ZS; Kumar S; Manne U; Creighton CJ; Varambally S
    Neoplasia; 2022 Mar; 25():18-27. PubMed ID: 35078134
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A User-Friendly Visualization Tool for Multi-Omics Data.
    Huh S; Kim MS
    Proteomics; 2020 Nov; 20(21-22):e2000136. PubMed ID: 32744797
    [TBL] [Abstract][Full Text] [Related]  

  • 9. cbpManager: a web application to streamline the integration of clinical and genomic data in cBioPortal to support the Molecular Tumor Board.
    Ustjanzew A; Desuki A; Ritzel C; Dolezilek AC; Wagner DC; Christoph J; Unberath P; Kindler T; Faber J; Marini F; Panholzer T; Paret C
    BMC Med Inform Decis Mak; 2021 Dec; 21(1):358. PubMed ID: 34930224
    [TBL] [Abstract][Full Text] [Related]  

  • 10. canEvolve: a web portal for integrative oncogenomics.
    Samur MK; Yan Z; Wang X; Cao Q; Munshi NC; Li C; Shah PK
    PLoS One; 2013; 8(2):e56228. PubMed ID: 23418540
    [TBL] [Abstract][Full Text] [Related]  

  • 11. A proteogenomics data-driven knowledge base of human cancer.
    Liao Y; Savage SR; Dou Y; Shi Z; Yi X; Jiang W; Lei JT; Zhang B
    Cell Syst; 2023 Sep; 14(9):777-787.e5. PubMed ID: 37619559
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A Description of the Clinical Proteomic Tumor Analysis Consortium (CPTAC) Common Data Analysis Pipeline.
    Rudnick PA; Markey SP; Roth J; Mirokhin Y; Yan X; Tchekhovskoi DV; Edwards NJ; Thangudu RR; Ketchum KA; Kinsinger CR; Mesri M; Rodriguez H; Stein SE
    J Proteome Res; 2016 Mar; 15(3):1023-32. PubMed ID: 26860878
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Connecting genomic alterations to cancer biology with proteomics: the NCI Clinical Proteomic Tumor Analysis Consortium.
    Ellis MJ; Gillette M; Carr SA; Paulovich AG; Smith RD; Rodland KK; Townsend RR; Kinsinger C; Mesri M; Rodriguez H; Liebler DC;
    Cancer Discov; 2013 Oct; 3(10):1108-12. PubMed ID: 24124232
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Proteogenomic data and resources for pan-cancer analysis.
    Li Y; Dou Y; Da Veiga Leprevost F; Geffen Y; Calinawan AP; Aguet F; Akiyama Y; Anand S; Birger C; Cao S; Chaudhary R; Chilappagari P; Cieslik M; Colaprico A; Zhou DC; Day C; Domagalski MJ; Esai Selvan M; Fenyö D; Foltz SM; Francis A; Gonzalez-Robles T; Gümüş ZH; Heiman D; Holck M; Hong R; Hu Y; Jaehnig EJ; Ji J; Jiang W; Katsnelson L; Ketchum KA; Klein RJ; Lei JT; Liang WW; Liao Y; Lindgren CM; Ma W; Ma L; MacCoss MJ; Martins Rodrigues F; McKerrow W; Nguyen N; Oldroyd R; Pilozzi A; Pugliese P; Reva B; Rudnick P; Ruggles KV; Rykunov D; Savage SR; Schnaubelt M; Schraink T; Shi Z; Singhal D; Song X; Storrs E; Terekhanova NV; Thangudu RR; Thiagarajan M; Wang LB; Wang JM; Wang Y; Wen B; Wu Y; Wyczalkowski MA; Xin Y; Yao L; Yi X; Zhang H; Zhang Q; Zuhl M; Getz G; Ding L; Nesvizhskii AI; Wang P; Robles AI; Zhang B; Payne SH;
    Cancer Cell; 2023 Aug; 41(8):1397-1406. PubMed ID: 37582339
    [TBL] [Abstract][Full Text] [Related]  

  • 15. ProTrack: An Interactive Multi-Omics Data Browser for Proteogenomic Studies.
    Calinawan AP; Song X; Ji J; Dhanasekaran SM; Petralia F; Wang P; Reva B
    Proteomics; 2020 Nov; 20(21-22):e1900359. PubMed ID: 32510176
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Simplified and Unified Access to Cancer Proteogenomic Data.
    Lindgren CM; Adams DW; Kimball B; Boekweg H; Tayler S; Pugh SL; Payne SH
    J Proteome Res; 2021 Apr; 20(4):1902-1910. PubMed ID: 33560848
    [TBL] [Abstract][Full Text] [Related]  

  • 17. BRCA-Pathway: a structural integration and visualization system of TCGA breast cancer data on KEGG pathways.
    Kim I; Choi S; Kim S
    BMC Bioinformatics; 2018 Feb; 19(Suppl 1):42. PubMed ID: 29504910
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Empowering biologists with multi-omics data: colorectal cancer as a paradigm.
    Zhu J; Shi Z; Wang J; Zhang B
    Bioinformatics; 2015 May; 31(9):1436-43. PubMed ID: 25527095
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Web-TCGA: an online platform for integrated analysis of molecular cancer data sets.
    Deng M; Brägelmann J; Schultze JL; Perner S
    BMC Bioinformatics; 2016 Feb; 17():72. PubMed ID: 26852330
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Spatially aware graph neural networks and cross-level molecular profile prediction in colon cancer histopathology: a retrospective multi-cohort study.
    Ding K; Zhou M; Wang H; Zhang S; Metaxas DN
    Lancet Digit Health; 2022 Nov; 4(11):e787-e795. PubMed ID: 36307192
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 17.