216 related articles for article (PubMed ID: 31308550)
1. EPIC: software toolkit for elution profile-based inference of protein complexes.
Hu LZ; Goebels F; Tan JH; Wolf E; Kuzmanov U; Wan C; Phanse S; Xu C; Schertzberg M; Fraser AG; Bader GD; Emili A
Nat Methods; 2019 Aug; 16(8):737-742. PubMed ID: 31308550
[TBL] [Abstract][Full Text] [Related]
2. A tissue-specific protein purification approach in Caenorhabditis elegans identifies novel interaction partners of DLG-1/Discs large.
Waaijers S; Muñoz J; Berends C; Ramalho JJ; Goerdayal SS; Low TY; Zoumaro-Djayoon AD; Hoffmann M; Koorman T; Tas RP; Harterink M; Seelk S; Kerver J; Hoogenraad CC; Bossinger O; Tursun B; van den Heuvel S; Heck AJ; Boxem M
BMC Biol; 2016 Aug; 14():66. PubMed ID: 27506200
[TBL] [Abstract][Full Text] [Related]
3. A feature extraction free approach for protein interactome inference from co-elution data.
Chen YH; Chao KH; Wong JY; Liu CF; Leu JY; Tsai HK
Brief Bioinform; 2023 Jul; 24(4):. PubMed ID: 37328692
[TBL] [Abstract][Full Text] [Related]
4. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network.
Simonis N; Rual JF; Carvunis AR; Tasan M; Lemmens I; Hirozane-Kishikawa T; Hao T; Sahalie JM; Venkatesan K; Gebreab F; Cevik S; Klitgord N; Fan C; Braun P; Li N; Ayivi-Guedehoussou N; Dann E; Bertin N; Szeto D; Dricot A; Yildirim MA; Lin C; de Smet AS; Kao HL; Simon C; Smolyar A; Ahn JS; Tewari M; Boxem M; Milstein S; Yu H; Dreze M; Vandenhaute J; Gunsalus KC; Cusick ME; Hill DE; Tavernier J; Roth FP; Vidal M
Nat Methods; 2009 Jan; 6(1):47-54. PubMed ID: 19123269
[TBL] [Abstract][Full Text] [Related]
5. Caenorhabditis elegans phosphatase complexes in UniProtKB and Complex Portal.
Bye-A-Jee H; Zaru R; Magrane M; Orchard S;
FEBS J; 2020 Jul; 287(13):2664-2684. PubMed ID: 31944606
[TBL] [Abstract][Full Text] [Related]
6. Affinity purification of protein complexes in C. elegans.
Zanin E; Dumont J; Gassmann R; Cheeseman I; Maddox P; Bahmanyar S; Carvalho A; Niessen S; Yates JR; Oegema K; Desai A
Methods Cell Biol; 2011; 106():289-322. PubMed ID: 22118282
[TBL] [Abstract][Full Text] [Related]
7. Micro-proteomics with iterative data analysis: Proteome analysis in C. elegans at the single worm level.
Bensaddek D; Narayan V; Nicolas A; Murillo AB; Gartner A; Kenyon CJ; Lamond AI
Proteomics; 2016 Feb; 16(3):381-92. PubMed ID: 26552604
[TBL] [Abstract][Full Text] [Related]
8. Co-fractionation-mass spectrometry to characterize native mitochondrial protein assemblies in mammalian neurons and brain.
Zilocchi M; Rahmatbakhsh M; Moutaoufik MT; Broderick K; Gagarinova A; Jessulat M; Phanse S; Aoki H; Aly KA; Babu M
Nat Protoc; 2023 Dec; 18(12):3918-3973. PubMed ID: 37985878
[TBL] [Abstract][Full Text] [Related]
9. Mass spectrometry-based shotgun proteomic analysis of C. elegans protein complexes.
Fonslow BR; Moresco JJ; Tu PG; Aalto AP; Pasquinelli AE; Dillin AG; Yates JR
WormBook; 2014 Jun; ():1-18. PubMed ID: 24967700
[TBL] [Abstract][Full Text] [Related]
10. Histone Purification Combined with High-Resolution Mass Spectrometry to Examine Histone Post-Translational Modifications and Histone Variants in Caenorhabditis elegans.
Millan-Ariño L; Yuan ZF; Oomen ME; Brandenburg S; Chernobrovkin A; Salignon J; Körner L; Zubarev RA; Garcia BA; Riedel CG
Curr Protoc Protein Sci; 2020 Dec; 102(1):e114. PubMed ID: 32997895
[TBL] [Abstract][Full Text] [Related]
11. ATX-3, CDC-48 and UBXN-5: a new trimolecular complex in Caenorhabditis elegans.
Rodrigues AJ; Neves-Carvalho A; Ferro A; Rokka A; Corthals G; Logarinho E; Maciel P
Biochem Biophys Res Commun; 2009 Sep; 386(4):575-81. PubMed ID: 19545544
[TBL] [Abstract][Full Text] [Related]
12. Two-Dimensional Biochemical Purification for Global Proteomic Analysis of Macromolecular Protein Complexes.
Pourhaghighi R; Emili A
Methods Mol Biol; 2019; 1871():445-454. PubMed ID: 30276754
[TBL] [Abstract][Full Text] [Related]
13. Caenorhabditis elegans has a phosphoproteome atypical for metazoans that is enriched in developmental and sex determination proteins.
Zielinska DF; Gnad F; Jedrusik-Bode M; Wiśniewski JR; Mann M
J Proteome Res; 2009 Aug; 8(8):4039-49. PubMed ID: 19530675
[TBL] [Abstract][Full Text] [Related]
14. Strategy for high-throughput identification of protein complexes by array-based multi-dimensional liquid chromatography-mass spectrometry.
Wang X; Yan G; Zheng H; Gao M; Zhang X
J Chromatogr A; 2021 Aug; 1652():462351. PubMed ID: 34174714
[TBL] [Abstract][Full Text] [Related]
15. A map of the interactome network of the metazoan C. elegans.
Li S; Armstrong CM; Bertin N; Ge H; Milstein S; Boxem M; Vidalain PO; Han JD; Chesneau A; Hao T; Goldberg DS; Li N; Martinez M; Rual JF; Lamesch P; Xu L; Tewari M; Wong SL; Zhang LV; Berriz GF; Jacotot L; Vaglio P; Reboul J; Hirozane-Kishikawa T; Li Q; Gabel HW; Elewa A; Baumgartner B; Rose DJ; Yu H; Bosak S; Sequerra R; Fraser A; Mango SE; Saxton WM; Strome S; Van Den Heuvel S; Piano F; Vandenhaute J; Sardet C; Gerstein M; Doucette-Stamm L; Gunsalus KC; Harper JW; Cusick ME; Roth FP; Hill DE; Vidal M
Science; 2004 Jan; 303(5657):540-3. PubMed ID: 14704431
[TBL] [Abstract][Full Text] [Related]
16. Interaction proteomics: characterization of protein complexes using tandem affinity purification-mass spectrometry.
Völkel P; Le Faou P; Angrand PO
Biochem Soc Trans; 2010 Aug; 38(4):883-7. PubMed ID: 20658971
[TBL] [Abstract][Full Text] [Related]
17. Meta-analysis of Caenorhabditis elegans single-cell developmental data reveals multi-frequency oscillation in gene activation.
Hutchison LAD; Berger B; Kohane IS
Bioinformatics; 2020 Jul; 36(13):4047-4057. PubMed ID: 31860066
[TBL] [Abstract][Full Text] [Related]
18. Dynamic remodeling of Escherichia coli interactome in response to environmental perturbations.
Youssef A; Bian F; Paniikov NS; Crovella M; Emili A
Proteomics; 2023 Nov; 23(21-22):e2200404. PubMed ID: 37248827
[TBL] [Abstract][Full Text] [Related]
19. NeuCode Labeling in Nematodes: Proteomic and Phosphoproteomic Impact of Ascaroside Treatment in Caenorhabditis elegans.
Rhoads TW; Prasad A; Kwiecien NW; Merrill AE; Zawack K; Westphall MS; Schroeder FC; Kimble J; Coon JJ
Mol Cell Proteomics; 2015 Nov; 14(11):2922-35. PubMed ID: 26392051
[TBL] [Abstract][Full Text] [Related]
20. Quantification of Insoluble Protein Aggregation in Caenorhabditis elegans during Aging with a Novel Data-Independent Acquisition Workflow.
Xie X; Chamoli M; Bhaumik D; Sivapatham R; Angeli S; Andersen JK; Lithgow GJ; Schilling B
J Vis Exp; 2020 Aug; (162):. PubMed ID: 32831297
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
