These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

362 related articles for article (PubMed ID: 31315562)

  • 21. msCRUSH: Fast Tandem Mass Spectral Clustering Using Locality Sensitive Hashing.
    Wang L; Li S; Tang H
    J Proteome Res; 2019 Jan; 18(1):147-158. PubMed ID: 30511858
    [TBL] [Abstract][Full Text] [Related]  

  • 22. An accurate and efficient algorithm for Peptide and ptm identification by tandem mass spectrometry.
    Ning K; Ng HK; Leong HW
    Genome Inform; 2007; 19():119-30. PubMed ID: 18546510
    [TBL] [Abstract][Full Text] [Related]  

  • 23. An SVM scorer for more sensitive and reliable peptide identification via tandem mass spectrometry.
    Wang H; Fu Y; Sun R; He S; Zeng R; Gao W
    Pac Symp Biocomput; 2006; ():303-14. PubMed ID: 17094248
    [TBL] [Abstract][Full Text] [Related]  

  • 24. SpecEncoder: deep metric learning for accurate peptide identification in proteomics.
    Liu K; Tao C; Ye Y; Tang H
    Bioinformatics; 2024 Jun; 40(Supplement_1):i257-i265. PubMed ID: 38940141
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Analytical utility of mass spectral binning in proteomic experiments by SPectral Immonium Ion Detection (SPIID).
    Kelstrup CD; Frese C; Heck AJ; Olsen JV; Nielsen ML
    Mol Cell Proteomics; 2014 Aug; 13(8):1914-24. PubMed ID: 24895383
    [TBL] [Abstract][Full Text] [Related]  

  • 26. APP: an Automated Proteomics Pipeline for the analysis of mass spectrometry data based on multiple open access tools.
    Malm EK; Srivastava V; Sundqvist G; Bulone V
    BMC Bioinformatics; 2014 Dec; 15(1):441. PubMed ID: 25547515
    [TBL] [Abstract][Full Text] [Related]  

  • 27. MRUniNovo: an efficient tool for de novo peptide sequencing utilizing the hadoop distributed computing framework.
    Li C; Chen T; He Q; Zhu Y; Li K
    Bioinformatics; 2017 Mar; 33(6):944-946. PubMed ID: 27993788
    [TBL] [Abstract][Full Text] [Related]  

  • 28. An algorithm for identifying multiply modified endogenous proteins using both full-scan and high-resolution tandem mass spectrometric data.
    Mazur MT; Fyhr R
    Rapid Commun Mass Spectrom; 2011 Dec; 25(23):3617-26. PubMed ID: 22095511
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Harvest: an open-source tool for the validation and improvement of peptide identification metrics and fragmentation exploration.
    McHugh LC; Arthur JW
    BMC Bioinformatics; 2010 Sep; 11():448. PubMed ID: 20815925
    [TBL] [Abstract][Full Text] [Related]  

  • 30. A dynamic noise level algorithm for spectral screening of peptide MS/MS spectra.
    Xu H; Freitas MA
    BMC Bioinformatics; 2010 Aug; 11():436. PubMed ID: 20731867
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Adaptive discriminant function analysis and reranking of MS/MS database search results for improved peptide identification in shotgun proteomics.
    Ding Y; Choi H; Nesvizhskii AI
    J Proteome Res; 2008 Nov; 7(11):4878-89. PubMed ID: 18788775
    [TBL] [Abstract][Full Text] [Related]  

  • 32. General framework for developing and evaluating database scoring algorithms using the TANDEM search engine.
    MacLean B; Eng JK; Beavis RC; McIntosh M
    Bioinformatics; 2006 Nov; 22(22):2830-2. PubMed ID: 16877754
    [TBL] [Abstract][Full Text] [Related]  

  • 33. PGA: an R/Bioconductor package for identification of novel peptides using a customized database derived from RNA-Seq.
    Wen B; Xu S; Zhou R; Zhang B; Wang X; Liu X; Xu X; Liu S
    BMC Bioinformatics; 2016 Jun; 17(1):244. PubMed ID: 27316337
    [TBL] [Abstract][Full Text] [Related]  

  • 34. A Fast and Memory-Efficient Spectral Library Search Algorithm Using Locality-Sensitive Hashing.
    Wang L; Liu K; Li S; Tang H
    Proteomics; 2020 Nov; 20(21-22):e2000002. PubMed ID: 32415809
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Accelerating open modification spectral library searching on tensor core in high-dimensional space.
    Kang J; Xu W; Bittremieux W; Moshiri N; Rosing T
    Bioinformatics; 2023 Jul; 39(7):. PubMed ID: 37369033
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Development and validation of a spectral library searching method for peptide identification from MS/MS.
    Lam H; Deutsch EW; Eddes JS; Eng JK; King N; Stein SE; Aebersold R
    Proteomics; 2007 Mar; 7(5):655-67. PubMed ID: 17295354
    [TBL] [Abstract][Full Text] [Related]  

  • 37. MaSS-Simulator: A Highly Configurable Simulator for Generating MS/MS Datasets for Benchmarking of Proteomics Algorithms.
    Awan MG; Saeed F
    Proteomics; 2018 Oct; 18(20):e1800206. PubMed ID: 30216669
    [TBL] [Abstract][Full Text] [Related]  

  • 38. A support for the identification of non-tryptic peptides based on low resolution tandem and sequential mass spectrometry data: the INSPIRE software.
    Losito I; Mavelli F; Loiotile AD; Palmisano F
    Anal Chim Acta; 2012 Mar; 718():70-7. PubMed ID: 22305900
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Data-Dependent Scoring Parameter Optimization in MS-GF+ Using Spectrum Quality Filter.
    Jo H; Paek E
    J Proteome Res; 2018 Oct; 17(10):3593-3598. PubMed ID: 30033731
    [TBL] [Abstract][Full Text] [Related]  

  • 40. [A novel approach for peptide identification by tandem mass spectrometry].
    Sheng QH; Tang HX; Xie T; Wang LS; Ding DF
    Sheng Wu Hua Xue Yu Sheng Wu Wu Li Xue Bao (Shanghai); 2003 Aug; 35(8):734-40. PubMed ID: 12897969
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 19.