313 related articles for article (PubMed ID: 31316056)
1. Predictive metabolomic profiling of microbial communities using amplicon or metagenomic sequences.
Mallick H; Franzosa EA; Mclver LJ; Banerjee S; Sirota-Madi A; Kostic AD; Clish CB; Vlamakis H; Xavier RJ; Huttenhower C
Nat Commun; 2019 Jul; 10(1):3136. PubMed ID: 31316056
[TBL] [Abstract][Full Text] [Related]
2. TaxiBGC: a Taxonomy-Guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Secondary Metabolite Production Potential in Metagenomes.
Gupta VK; Bakshi U; Chang D; Lee AR; Davis JM; Chandrasekaran S; Jin YS; Freeman MF; Sung J
mSystems; 2022 Dec; 7(6):e0092522. PubMed ID: 36378489
[TBL] [Abstract][Full Text] [Related]
3. Dynamics of metatranscription in the inflammatory bowel disease gut microbiome.
Schirmer M; Franzosa EA; Lloyd-Price J; McIver LJ; Schwager R; Poon TW; Ananthakrishnan AN; Andrews E; Barron G; Lake K; Prasad M; Sauk J; Stevens B; Wilson RG; Braun J; Denson LA; Kugathasan S; McGovern DPB; Vlamakis H; Xavier RJ; Huttenhower C
Nat Microbiol; 2018 Mar; 3(3):337-346. PubMed ID: 29311644
[TBL] [Abstract][Full Text] [Related]
4. Towards a unified medical microbiome ecology of the OMU for metagenomes and the OTU for microbes.
Ma ZS
BMC Bioinformatics; 2024 Mar; 25(1):137. PubMed ID: 38553666
[TBL] [Abstract][Full Text] [Related]
5. Gut microbial and metabolomic profiles after fecal microbiota transplantation in pediatric ulcerative colitis patients.
Nusbaum DJ; Sun F; Ren J; Zhu Z; Ramsy N; Pervolarakis N; Kunde S; England W; Gao B; Fiehn O; Michail S; Whiteson K
FEMS Microbiol Ecol; 2018 Sep; 94(9):. PubMed ID: 30010747
[TBL] [Abstract][Full Text] [Related]
6. Abundance profiling of specific gene groups using precomputed gut metagenomes yields novel biological hypotheses.
Yarygin K; Tyakht A; Larin A; Kostryukova E; Kolchenko S; Bitner V; Alexeev D
PLoS One; 2017; 12(4):e0176154. PubMed ID: 28448616
[TBL] [Abstract][Full Text] [Related]
7. CViewer: a Java-based statistical framework for integration of shotgun metagenomics with other omics datasets.
Koci O; Russell RK; Shaikh MG; Edwards C; Gerasimidis K; Ijaz UZ
Microbiome; 2024 Jun; 12(1):117. PubMed ID: 38951915
[TBL] [Abstract][Full Text] [Related]
8. Functional dynamics of bacterial species in the mouse gut microbiome revealed by metagenomic and metatranscriptomic analyses.
Chung YW; Gwak HJ; Moon S; Rho M; Ryu JH
PLoS One; 2020; 15(1):e0227886. PubMed ID: 31978162
[TBL] [Abstract][Full Text] [Related]
9. Improved Metabolite Prediction Using Microbiome Data-Based Elastic Net Models.
Xie J; Cho H; Lin BM; Pillai M; Heimisdottir LH; Bandyopadhyay D; Zou F; Roach J; Divaris K; Wu D
Front Cell Infect Microbiol; 2021; 11():734416. PubMed ID: 34760716
[TBL] [Abstract][Full Text] [Related]
10. Comparison of Fecal Collection Methods on Variation in Gut Metagenomics and Untargeted Metabolomics.
Guan H; Pu Y; Liu C; Lou T; Tan S; Kong M; Sun Z; Mei Z; Qi Q; Quan Z; Zhao G; Zheng Y
mSphere; 2021 Oct; 6(5):e0063621. PubMed ID: 34523982
[TBL] [Abstract][Full Text] [Related]
11. Quantitative Assessment of Shotgun Metagenomics and 16S rDNA Amplicon Sequencing in the Study of Human Gut Microbiome.
Laudadio I; Fulci V; Palone F; Stronati L; Cucchiara S; Carissimi C
OMICS; 2018 Apr; 22(4):248-254. PubMed ID: 29652573
[TBL] [Abstract][Full Text] [Related]
12. Ecology-guided prediction of cross-feeding interactions in the human gut microbiome.
Goyal A; Wang T; Dubinkina V; Maslov S
Nat Commun; 2021 Feb; 12(1):1335. PubMed ID: 33637740
[TBL] [Abstract][Full Text] [Related]
13. The unique composition of Indian gut microbiome, gene catalogue, and associated fecal metabolome deciphered using multi-omics approaches.
Dhakan DB; Maji A; Sharma AK; Saxena R; Pulikkan J; Grace T; Gomez A; Scaria J; Amato KR; Sharma VK
Gigascience; 2019 Mar; 8(3):. PubMed ID: 30698687
[TBL] [Abstract][Full Text] [Related]
14. Automated and Accurate Estimation of Gene Family Abundance from Shotgun Metagenomes.
Nayfach S; Bradley PH; Wyman SK; Laurent TJ; Williams A; Eisen JA; Pollard KS; Sharpton TJ
PLoS Comput Biol; 2015 Nov; 11(11):e1004573. PubMed ID: 26565399
[TBL] [Abstract][Full Text] [Related]
15. Gut microbiome structure and metabolic activity in inflammatory bowel disease.
Franzosa EA; Sirota-Madi A; Avila-Pacheco J; Fornelos N; Haiser HJ; Reinker S; Vatanen T; Hall AB; Mallick H; McIver LJ; Sauk JS; Wilson RG; Stevens BW; Scott JM; Pierce K; Deik AA; Bullock K; Imhann F; Porter JA; Zhernakova A; Fu J; Weersma RK; Wijmenga C; Clish CB; Vlamakis H; Huttenhower C; Xavier RJ
Nat Microbiol; 2019 Feb; 4(2):293-305. PubMed ID: 30531976
[TBL] [Abstract][Full Text] [Related]
16. Metabolic Model-Based Integration of Microbiome Taxonomic and Metabolomic Profiles Elucidates Mechanistic Links between Ecological and Metabolic Variation.
Noecker C; Eng A; Srinivasan S; Theriot CM; Young VB; Jansson JK; Fredricks DN; Borenstein E
mSystems; 2016; 1(1):. PubMed ID: 27239563
[TBL] [Abstract][Full Text] [Related]
17. Metagenome-scale community metabolic modelling for understanding the role of gut microbiota in human health.
Beura S; Kundu P; Das AK; Ghosh A
Comput Biol Med; 2022 Oct; 149():105997. PubMed ID: 36055158
[TBL] [Abstract][Full Text] [Related]
18. Quantitative microbiome profiling links gut community variation to microbial load.
Vandeputte D; Kathagen G; D'hoe K; Vieira-Silva S; Valles-Colomer M; Sabino J; Wang J; Tito RY; De Commer L; Darzi Y; Vermeire S; Falony G; Raes J
Nature; 2017 Nov; 551(7681):507-511. PubMed ID: 29143816
[TBL] [Abstract][Full Text] [Related]
19. Strain Structure and Dynamics Revealed by Targeted Deep Sequencing of the Honey Bee Gut Microbiome.
Bobay LM; Wissel EF; Raymann K
mSphere; 2020 Aug; 5(4):. PubMed ID: 32848005
[TBL] [Abstract][Full Text] [Related]
20. Multi-omics analyses of the ulcerative colitis gut microbiome link Bacteroides vulgatus proteases with disease severity.
Mills RH; Dulai PS; Vázquez-Baeza Y; Sauceda C; Daniel N; Gerner RR; Batachari LE; Malfavon M; Zhu Q; Weldon K; Humphrey G; Carrillo-Terrazas M; Goldasich LD; Bryant M; Raffatellu M; Quinn RA; Gewirtz AT; Chassaing B; Chu H; Sandborn WJ; Dorrestein PC; Knight R; Gonzalez DJ
Nat Microbiol; 2022 Feb; 7(2):262-276. PubMed ID: 35087228
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]