These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

311 related articles for article (PubMed ID: 31316797)

  • 21. Molding atomic structures into intermediate-resolution cryo-EM density maps of ribosomal complexes using real-space refinement.
    Gao H; Frank J
    Structure; 2005 Mar; 13(3):401-6. PubMed ID: 15766541
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Using cryo-electron microscopy maps for X-ray structure determination.
    Zeng L; Ding W; Hao Q
    IUCrJ; 2018 Jul; 5(Pt 4):382-389. PubMed ID: 30002839
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Simulation-Based Methods for Model Building and Refinement in Cryoelectron Microscopy.
    Dodd T; Yan C; Ivanov I
    J Chem Inf Model; 2020 May; 60(5):2470-2483. PubMed ID: 32202798
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Constructing atomic structural models into cryo-EM densities using molecular dynamics - Pros and cons.
    Wang Y; Shekhar M; Thifault D; Williams CJ; McGreevy R; Richardson J; Singharoy A; Tajkhorshid E
    J Struct Biol; 2018 Nov; 204(2):319-328. PubMed ID: 30092279
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Progressive and accurate assembly of multi-domain protein structures from cryo-EM density maps.
    Zhou X; Li Y; Zhang C; Zheng W; Zhang G; Zhang Y
    bioRxiv; 2020 Oct; ():. PubMed ID: 33083802
    [TBL] [Abstract][Full Text] [Related]  

  • 26. BCL::EM-Fit: rigid body fitting of atomic structures into density maps using geometric hashing and real space refinement.
    Woetzel N; Lindert S; Stewart PL; Meiler J
    J Struct Biol; 2011 Sep; 175(3):264-76. PubMed ID: 21565271
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Flexible fitting of high-resolution x-ray structures into cryoelectron microscopy maps using biased molecular dynamics simulations.
    Orzechowski M; Tama F
    Biophys J; 2008 Dec; 95(12):5692-705. PubMed ID: 18849406
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Use of evolutionary information in the fitting of atomic level protein models in low resolution cryo-EM map of a protein assembly improves the accuracy of the fitting.
    Joseph AP; Swapna LS; Rakesh R; Srinivasan N
    J Struct Biol; 2016 Sep; 195(3):294-305. PubMed ID: 27444391
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Efficient Flexible Fitting Refinement with Automatic Error Fixing for De Novo Structure Modeling from Cryo-EM Density Maps.
    Mori T; Terashi G; Matsuoka D; Kihara D; Sugita Y
    J Chem Inf Model; 2021 Jul; 61(7):3516-3528. PubMed ID: 34142833
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Automated simulation-based membrane protein refinement into cryo-EM data.
    Yvonnesdotter L; Rovšnik U; Blau C; Lycksell M; Howard RJ; Lindahl E
    Biophys J; 2023 Jul; 122(13):2773-2781. PubMed ID: 37277992
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Accurate flexible refinement of atomic models against medium-resolution cryo-EM maps using damped dynamics.
    Kovacs JA; Galkin VE; Wriggers W
    BMC Struct Biol; 2018 Sep; 18(1):12. PubMed ID: 30219048
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Molecular Dynamics Flexible Fitting: All You Want to Know About Resolution Exchange.
    Vant JW; Sarkar D; Gupta C; Shekhar MS; Mittal S; Singharoy A
    Methods Mol Biol; 2020; 2165():301-315. PubMed ID: 32621233
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Integrative Modeling of Macromolecular Assemblies from Low to Near-Atomic Resolution.
    Xu X; Yan C; Wohlhueter R; Ivanov I
    Comput Struct Biotechnol J; 2015; 13():492-503. PubMed ID: 26557958
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Normal mode based flexible fitting of high-resolution structure into low-resolution experimental data from cryo-EM.
    Tama F; Miyashita O; Brooks CL
    J Struct Biol; 2004 Sep; 147(3):315-26. PubMed ID: 15450300
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Re-evaluation of low-resolution crystal structures via interactive molecular-dynamics flexible fitting (iMDFF): a case study in complement C4.
    Croll TI; Andersen GR
    Acta Crystallogr D Struct Biol; 2016 Sep; 72(Pt 9):1006-16. PubMed ID: 27599733
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Acceleration of cryo-EM Flexible Fitting for Large Biomolecular Systems by Efficient Space Partitioning.
    Mori T; Kulik M; Miyashita O; Jung J; Tama F; Sugita Y
    Structure; 2019 Jan; 27(1):161-174.e3. PubMed ID: 30344106
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Refinement of AlphaFold2 models against experimental and hybrid cryo-EM density maps.
    Alshammari M; Wriggers W; Sun J; He J
    QRB Discov; 2022; 3():. PubMed ID: 37485023
    [TBL] [Abstract][Full Text] [Related]  

  • 38. A New Strategy for Atomic Flexible Fitting in Cryo-EM Maps by Molecular Dynamics with Excited Normal Modes (MDeNM-EMfit).
    Costa MGS; Fagnen C; Vénien-Bryan C; Perahia D
    J Chem Inf Model; 2020 May; 60(5):2419-2423. PubMed ID: 31944765
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Flexible Fitting of Small Molecules into Electron Microscopy Maps Using Molecular Dynamics Simulations with Neural Network Potentials.
    Vant JW; Lahey SJ; Jana K; Shekhar M; Sarkar D; Munk BH; Kleinekathöfer U; Mittal S; Rowley C; Singharoy A
    J Chem Inf Model; 2020 May; 60(5):2591-2604. PubMed ID: 32207947
    [TBL] [Abstract][Full Text] [Related]  

  • 40.
    ; ; . PubMed ID:
    [No Abstract]   [Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 16.