651 related articles for article (PubMed ID: 31350781)
1. An 'eFP-Seq Browser' for visualizing and exploring RNA sequencing data.
Sullivan A; Purohit PK; Freese NH; Pasha A; Esteban E; Waese J; Wu A; Chen M; Chin CY; Song R; Watharkar SR; Chan AP; Krishnakumar V; Vaughn MW; Town C; Loraine AE; Provart NJ
Plant J; 2019 Nov; 100(3):641-654. PubMed ID: 31350781
[TBL] [Abstract][Full Text] [Related]
2. Mining Arabidopsis thaliana RNA-seq data with Integrated Genome Browser reveals stress-induced alternative splicing of the putative splicing regulator SR45a.
Gulledge AA; Roberts AD; Vora H; Patel K; Loraine AE
Am J Bot; 2012 Feb; 99(2):219-31. PubMed ID: 22291167
[TBL] [Abstract][Full Text] [Related]
3. AgriSeqDB: an online RNA-Seq database for functional studies of agriculturally relevant plant species.
Robinson AJ; Tamiru M; Salby R; Bolitho C; Williams A; Huggard S; Fisch E; Unsworth K; Whelan J; Lewsey MG
BMC Plant Biol; 2018 Sep; 18(1):200. PubMed ID: 30231853
[TBL] [Abstract][Full Text] [Related]
4. An "Electronic Fluorescent Pictograph" browser for exploring and analyzing large-scale biological data sets.
Winter D; Vinegar B; Nahal H; Ammar R; Wilson GV; Provart NJ
PLoS One; 2007 Aug; 2(8):e718. PubMed ID: 17684564
[TBL] [Abstract][Full Text] [Related]
5. A protocol for visual analysis of alternative splicing in RNA-Seq data using integrated genome browser.
Gulledge AA; Vora H; Patel K; Loraine AE
Methods Mol Biol; 2014; 1158():123-37. PubMed ID: 24792048
[TBL] [Abstract][Full Text] [Related]
6. A Human "eFP" Browser for Generating Gene Expression Anatograms.
Patel RV; Hamanishi ET; Provart NJ
PLoS One; 2016; 11(3):e0150982. PubMed ID: 26954504
[TBL] [Abstract][Full Text] [Related]
7. RNASeqBrowser: a genome browser for simultaneous visualization of raw strand specific RNAseq reads and UCSC genome browser custom tracks.
An J; Lai J; Wood DL; Sajjanhar A; Wang C; Tevz G; Lehman ML; Nelson CC
BMC Genomics; 2015 Mar; 16(1):145. PubMed ID: 25766521
[TBL] [Abstract][Full Text] [Related]
8. TomExpress, a unified tomato RNA-Seq platform for visualization of expression data, clustering and correlation networks.
Zouine M; Maza E; Djari A; Lauvernier M; Frasse P; Smouni A; Pirrello J; Bouzayen M
Plant J; 2017 Nov; 92(4):727-735. PubMed ID: 28873253
[TBL] [Abstract][Full Text] [Related]
9. De Novo Plant Transcriptome Assembly and Annotation Using Illumina RNA-Seq Reads.
Kerr SC; Gaiti F; Tanurdzic M
Methods Mol Biol; 2019; 1933():265-275. PubMed ID: 30945191
[TBL] [Abstract][Full Text] [Related]
10. RNA-seq of Arabidopsis pollen uncovers novel transcription and alternative splicing.
Loraine AE; McCormick S; Estrada A; Patel K; Qin P
Plant Physiol; 2013 Jun; 162(2):1092-109. PubMed ID: 23590974
[TBL] [Abstract][Full Text] [Related]
11. RiboGalaxy: A browser based platform for the alignment, analysis and visualization of ribosome profiling data.
Michel AM; Mullan JP; Velayudhan V; O'Connor PB; Donohue CA; Baranov PV
RNA Biol; 2016; 13(3):316-9. PubMed ID: 26821742
[TBL] [Abstract][Full Text] [Related]
12. Extensive transcriptomic and epigenomic remodelling occurs during Arabidopsis thaliana germination.
Narsai R; Gouil Q; Secco D; Srivastava A; Karpievitch YV; Liew LC; Lister R; Lewsey MG; Whelan J
Genome Biol; 2017 Sep; 18(1):172. PubMed ID: 28911330
[TBL] [Abstract][Full Text] [Related]
13. QuickRNASeq lifts large-scale RNA-seq data analyses to the next level of automation and interactive visualization.
Zhao S; Xi L; Quan J; Xi H; Zhang Y; von Schack D; Vincent M; Zhang B
BMC Genomics; 2016 Jan; 17():39. PubMed ID: 26747388
[TBL] [Abstract][Full Text] [Related]
14. Read-Split-Run: an improved bioinformatics pipeline for identification of genome-wide non-canonical spliced regions using RNA-Seq data.
Bai Y; Kinne J; Donham B; Jiang F; Ding L; Hassler JR; Kaufman RJ
BMC Genomics; 2016 Aug; 17 Suppl 7(Suppl 7):503. PubMed ID: 27556805
[TBL] [Abstract][Full Text] [Related]
15. Freddie: annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing.
Orabi B; Xie N; McConeghy B; Dong X; Chauve C; Hach F
Nucleic Acids Res; 2023 Jan; 51(2):e11. PubMed ID: 36478271
[TBL] [Abstract][Full Text] [Related]
16. Unraveling chloroplast transcriptomes with ChloroSeq, an organelle RNA-Seq bioinformatics pipeline.
Smith DR; Sanitá Lima M
Brief Bioinform; 2017 Nov; 18(6):1012-1016. PubMed ID: 27677960
[TBL] [Abstract][Full Text] [Related]
17. Analysis of RNA-Seq data with TopHat and Cufflinks for genome-wide expression analysis of jasmonate-treated plants and plant cultures.
Pollier J; Rombauts S; Goossens A
Methods Mol Biol; 2013; 1011():305-15. PubMed ID: 23616006
[TBL] [Abstract][Full Text] [Related]
18. Analysis of EBV Transcription Using High-Throughput RNA Sequencing.
O'Grady T; Baddoo M; Flemington EK
Methods Mol Biol; 2017; 1532():105-121. PubMed ID: 27873270
[TBL] [Abstract][Full Text] [Related]
19. AS-Quant: Detection and Visualization of Alternative Splicing Events with RNA-seq Data.
Fahmi NA; Nassereddeen H; Chang J; Park M; Yeh H; Sun J; Fan D; Yong J; Zhang W
Int J Mol Sci; 2021 Apr; 22(9):. PubMed ID: 33922891
[TBL] [Abstract][Full Text] [Related]
20. PyBamView: a browser-based application for viewing short read alignments.
Gymrek M
Bioinformatics; 2014 Dec; 30(23):3405-7. PubMed ID: 25147359
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
