386 related articles for article (PubMed ID: 31358994)
1. Functional dissection of the Sox9-Kcnj2 locus identifies nonessential and instructive roles of TAD architecture.
Despang A; Schöpflin R; Franke M; Ali S; Jerković I; Paliou C; Chan WL; Timmermann B; Wittler L; Vingron M; Mundlos S; Ibrahim DM
Nat Genet; 2019 Aug; 51(8):1263-1271. PubMed ID: 31358994
[TBL] [Abstract][Full Text] [Related]
2. Tissue-specific CTCF-cohesin-mediated chromatin architecture delimits enhancer interactions and function in vivo.
Hanssen LLP; Kassouf MT; Oudelaar AM; Biggs D; Preece C; Downes DJ; Gosden M; Sharpe JA; Sloane-Stanley JA; Hughes JR; Davies B; Higgs DR
Nat Cell Biol; 2017 Aug; 19(8):952-961. PubMed ID: 28737770
[TBL] [Abstract][Full Text] [Related]
3. HOTTIP-dependent R-loop formation regulates CTCF boundary activity and TAD integrity in leukemia.
Luo H; Zhu G; Eshelman MA; Fung TK; Lai Q; Wang F; Zeisig BB; Lesperance J; Ma X; Chen S; Cesari N; Cogle C; Chen B; Xu B; Yang FC; So CWE; Qiu Y; Xu M; Huang S
Mol Cell; 2022 Feb; 82(4):833-851.e11. PubMed ID: 35180428
[TBL] [Abstract][Full Text] [Related]
4. Impact of 3D genome organization, guided by cohesin and CTCF looping, on sex-biased chromatin interactions and gene expression in mouse liver.
Matthews BJ; Waxman DJ
Epigenetics Chromatin; 2020 Jul; 13(1):30. PubMed ID: 32680543
[TBL] [Abstract][Full Text] [Related]
5. Computational prediction of CTCF/cohesin-based intra-TAD loops that insulate chromatin contacts and gene expression in mouse liver.
Matthews BJ; Waxman DJ
Elife; 2018 May; 7():. PubMed ID: 29757144
[TBL] [Abstract][Full Text] [Related]
6. Interplay between CTCF boundaries and a super enhancer controls cohesin extrusion trajectories and gene expression.
Vos ESM; Valdes-Quezada C; Huang Y; Allahyar A; Verstegen MJAM; Felder AK; van der Vegt F; Uijttewaal ECH; Krijger PHL; de Laat W
Mol Cell; 2021 Aug; 81(15):3082-3095.e6. PubMed ID: 34197738
[TBL] [Abstract][Full Text] [Related]
7. Integrative characterization of G-Quadruplexes in the three-dimensional chromatin structure.
Hou Y; Li F; Zhang R; Li S; Liu H; Qin ZS; Sun X
Epigenetics; 2019 Sep; 14(9):894-911. PubMed ID: 31177910
[TBL] [Abstract][Full Text] [Related]
8. Specific Contributions of Cohesin-SA1 and Cohesin-SA2 to TADs and Polycomb Domains in Embryonic Stem Cells.
Cuadrado A; Giménez-Llorente D; Kojic A; Rodríguez-Corsino M; Cuartero Y; Martín-Serrano G; Gómez-López G; Marti-Renom MA; Losada A
Cell Rep; 2019 Jun; 27(12):3500-3510.e4. PubMed ID: 31216471
[TBL] [Abstract][Full Text] [Related]
9. Topologically associating domains and chromatin loops depend on cohesin and are regulated by CTCF, WAPL, and PDS5 proteins.
Wutz G; Várnai C; Nagasaka K; Cisneros DA; Stocsits RR; Tang W; Schoenfelder S; Jessberger G; Muhar M; Hossain MJ; Walther N; Koch B; Kueblbeck M; Ellenberg J; Zuber J; Fraser P; Peters JM
EMBO J; 2017 Dec; 36(24):3573-3599. PubMed ID: 29217591
[TBL] [Abstract][Full Text] [Related]
10. The
Rodríguez-Carballo E; Lopez-Delisle L; Zhan Y; Fabre PJ; Beccari L; El-Idrissi I; Huynh THN; Ozadam H; Dekker J; Duboule D
Genes Dev; 2017 Nov; 31(22):2264-2281. PubMed ID: 29273679
[TBL] [Abstract][Full Text] [Related]
11. Formation of new chromatin domains determines pathogenicity of genomic duplications.
Franke M; Ibrahim DM; Andrey G; Schwarzer W; Heinrich V; Schöpflin R; Kraft K; Kempfer R; Jerković I; Chan WL; Spielmann M; Timmermann B; Wittler L; Kurth I; Cambiaso P; Zuffardi O; Houge G; Lambie L; Brancati F; Pombo A; Vingron M; Spitz F; Mundlos S
Nature; 2016 Oct; 538(7624):265-269. PubMed ID: 27706140
[TBL] [Abstract][Full Text] [Related]
12. Analysis of sub-kilobase chromatin topology reveals nano-scale regulatory interactions with variable dependence on cohesin and CTCF.
Aljahani A; Hua P; Karpinska MA; Quililan K; Davies JOJ; Oudelaar AM
Nat Commun; 2022 Apr; 13(1):2139. PubMed ID: 35440598
[TBL] [Abstract][Full Text] [Related]
13. 5C analysis of the Epidermal Differentiation Complex locus reveals distinct chromatin interaction networks between gene-rich and gene-poor TADs in skin epithelial cells.
Poterlowicz K; Yarker JL; Malashchuk I; Lajoie BR; Mardaryev AN; Gdula MR; Sharov AA; Kohwi-Shigematsu T; Botchkarev VA; Fessing MY
PLoS Genet; 2017 Sep; 13(9):e1006966. PubMed ID: 28863138
[TBL] [Abstract][Full Text] [Related]
14. Variable Extent of Lineage-Specificity and Developmental Stage-Specificity of Cohesin and CCCTC-Binding Factor Binding Within the Immunoglobulin and T Cell Receptor Loci.
Loguercio S; Barajas-Mora EM; Shih HY; Krangel MS; Feeney AJ
Front Immunol; 2018; 9():425. PubMed ID: 29593713
[TBL] [Abstract][Full Text] [Related]
15. Multiple CTCF sites cooperate with each other to maintain a TAD for enhancer-promoter interaction in the β-globin locus.
Kang J; Kim YW; Park S; Kang Y; Kim A
FASEB J; 2021 Aug; 35(8):e21768. PubMed ID: 34245617
[TBL] [Abstract][Full Text] [Related]
16. The Myc-associated zinc finger protein (MAZ) works together with CTCF to control cohesin positioning and genome organization.
Xiao T; Li X; Felsenfeld G
Proc Natl Acad Sci U S A; 2021 Feb; 118(7):. PubMed ID: 33558242
[TBL] [Abstract][Full Text] [Related]
17. Enhancer accessibility and CTCF occupancy underlie asymmetric TAD architecture and cell type specific genome topology.
Barrington C; Georgopoulou D; Pezic D; Varsally W; Herrero J; Hadjur S
Nat Commun; 2019 Jul; 10(1):2908. PubMed ID: 31266948
[TBL] [Abstract][Full Text] [Related]
18. CTCF is a DNA-tension-dependent barrier to cohesin-mediated loop extrusion.
Davidson IF; Barth R; Zaczek M; van der Torre J; Tang W; Nagasaka K; Janissen R; Kerssemakers J; Wutz G; Dekker C; Peters JM
Nature; 2023 Apr; 616(7958):822-827. PubMed ID: 37076620
[TBL] [Abstract][Full Text] [Related]
19. Induction of a chromatin boundary in vivo upon insertion of a TAD border.
Willemin A; Lopez-Delisle L; Bolt CC; Gadolini ML; Duboule D; Rodriguez-Carballo E
PLoS Genet; 2021 Jul; 17(7):e1009691. PubMed ID: 34292939
[TBL] [Abstract][Full Text] [Related]
20. Active enhancers strengthen insulation by RNA-mediated CTCF binding at chromatin domain boundaries.
Islam Z; Saravanan B; Walavalkar K; Farooq U; Singh AK; Radhakrishnan S; Thakur J; Pandit A; Henikoff S; Notani D
Genome Res; 2023 Jan; 33(1):1-17. PubMed ID: 36650052
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
